Rnf207 (ring finger protein 207) - Rat Genome Database

Name: Rnf207
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rnf207 (ring finger protein 207) Rattus norvegicus

Analyze

Symbol:

Rnf207

Name:

ring finger protein 207

RGD ID:

1586262

Description:

Predicted to enable Hsp70 protein binding activity and transmembrane transporter binding activity. Predicted to be involved in several processes, including positive regulation of voltage-gated potassium channel activity; regulation of cardiac muscle contraction; and regulation of heart looping. Predicted to be active in perinuclear region of cytoplasm. Orthologous to human RNF207 (ring finger protein 207); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC691246; similar to tripartite motif-containing 56

RGD Orthologs

Human

Mouse

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF207 (ring finger protein 207)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rnf207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf207 (ring finger protein 207)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rnf207 (ring finger protein 207)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RNF207 (ring finger protein 207)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf207b (ring finger protein 207b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F47G9.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf207	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,815,357 - 162,828,375 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	169,486,253 - 169,500,451 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,486,257 - 169,499,268 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	173,039,837 - 173,054,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	169,537,947 - 169,550,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	161,046,593 - 161,066,093 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

genetic disease (ISO)

long QT syndrome (ISO)

Neoplasm Invasiveness (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

diazinon (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dioxygen (EXP)

disulfiram (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

isoprenaline (ISO)

L-methionine (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctanoic acid (ISO)

sunitinib (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triclosan (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

positive regulation of delayed rectifier potassium channel activity (ISO)

positive regulation of gene expression (ISO)

positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization (IBA)

positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization (IBA,ISO)

regulation of cardiac muscle contraction (IBA)

regulation of heart looping (IBA)

Cellular Component

perinuclear region of cytoplasm (IBA,ISO)

Molecular Function

Hsp70 protein binding (IBA,ISO)

protein binding (ISO)

protein-folding chaperone binding (ISO)

transmembrane transporter binding (IBA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:25281747

Genomics

Comparative Map Data

Rnf207
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	162,815,357 - 162,828,375 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	169,486,253 - 169,500,451 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	169,486,257 - 169,499,268 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	173,039,837 - 173,054,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	169,537,947 - 169,550,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	161,046,593 - 161,066,093 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

RNF207
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	6,206,119 - 6,221,299 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	6,205,475 - 6,221,299 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	6,266,179 - 6,281,359 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	6,188,776 - 6,203,946 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	5,380,701 - 5,395,870 (+)	NCBI		Celera
Cytogenetic Map	1	p36.31	NCBI
HuRef	1	5,414,459 - 5,429,630 (+)	NCBI		HuRef
CHM1_1	1	6,254,831 - 6,270,001 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	5,731,763 - 5,746,943 (+)	NCBI		T2T-CHM13v2.0

Rnf207
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	152,391,475 - 152,403,686 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	152,391,476 - 152,403,450 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	152,307,018 - 152,319,076 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	152,307,019 - 152,318,993 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	151,681,132 - 151,692,734 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	151,150,823 - 151,162,408 (-)	NCBI		MGSCv36	mm8
Celera	4	154,594,355 - 154,605,972 (-)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI

RNF207
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	220,645,979 - 220,658,899 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	4,972,787 - 4,986,992 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	6,228,829 - 6,242,778 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	6,229,241 - 6,242,770 (+)	Ensembl	panpan1.1		panPan2

RNF207
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	60,105,200 - 60,119,902 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	60,106,297 - 60,118,670 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	60,114,909 - 60,129,921 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	60,320,633 - 60,335,661 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	60,321,442 - 60,335,653 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	60,320,217 - 60,335,203 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	60,187,028 - 60,202,012 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	60,588,433 - 60,603,475 (+)	NCBI		UU_Cfam_GSD_1.0

Rnf207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	30,580,768 - 30,596,429 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	1,066,957 - 1,079,030 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936623	1,065,260 - 1,079,918 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF207
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	67,106,552 - 67,116,510 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	67,105,347 - 67,119,167 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	62,013,475 - 62,024,064 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF207
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	125,518,231 - 125,530,249 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	29,624,482 - 29,638,653 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf207
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	5,178,299 - 5,183,610 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	5,176,316 - 5,183,610 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rnf207
32 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	78
Count of miRNA genes:	67
Interacting mature miRNAs:	70
Transcripts:	ENSRNOT00000046552
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	151113452	164465185	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	154828214	166875058	Rat

Markers in Region

RH143233

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	162,822,191 - 162,822,381 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,493,094 - 169,493,283	NCBI	Rnor6.0
Rnor_5.0	5	173,046,678 - 173,046,867	UniSTS	Rnor5.0
RGSC_v3.4	5	169,544,784 - 169,544,973	UniSTS	RGSC3.4
Celera	5	161,053,434 - 161,053,623	UniSTS
RH 3.4 Map	5	1141.1	UniSTS
Cytogenetic Map	5	q36	UniSTS

AI705792

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	162,815,512 - 162,815,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,486,415 - 169,486,590	NCBI	Rnor6.0
Rnor_5.0	5	173,039,999 - 173,040,174	UniSTS	Rnor5.0
RGSC_v3.4	5	169,538,105 - 169,538,280	UniSTS	RGSC3.4
Celera	5	161,046,755 - 161,046,930	UniSTS
RH 3.4 Map	5	1139.0	UniSTS
Cytogenetic Map	5	q36	UniSTS

AW525290

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	162,821,760 - 162,821,942 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,492,663 - 169,492,844	NCBI	Rnor6.0
Rnor_5.0	5	173,046,247 - 173,046,428	UniSTS	Rnor5.0
RGSC_v3.4	5	169,544,353 - 169,544,534	UniSTS	RGSC3.4
Celera	5	161,053,003 - 161,053,184	UniSTS
RH 3.4 Map	5	1141.3	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		43							4
Low	3		11	5	16	5	8	11	40	29	32	11	8
Below cutoff			46	36	3	36			28	6	9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001075996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000046552 ⟹ ENSRNOP00000047020

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	162,815,357 - 162,828,375 (-)	Ensembl
Rnor_6.0 Ensembl	5	169,486,257 - 169,499,268 (-)	Ensembl

RefSeq Acc Id:

XM_001075996 ⟹ XP_001075996

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI
Rnor_6.0	5	169,486,253 - 169,500,451 (-)	NCBI
Rnor_5.0	5	173,039,837 - 173,054,032 (-)	NCBI
RGSC_v3.4	5	169,537,947 - 169,550,915 (-)	RGD

Sequence:

show sequence

CCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGAGCCATCTGTTCAGCCCTAACTCTTTAATT
GCTATTGTAACACTGAATTATCCCACAGAGCAAAAGTCATCCAGAGCTGAGAAGGCCCTTAAAA
CAACCTGTAGGGCCAGCAGTAGGGCTCAGCAGGTAGCAGGCGCTTGCTGCTACAAGGCCTGATG
ACCTGAGTTCGACCCCAAGACTTTGATGGAGGAGAGAAGGAGAGACTTCTGCGAGTTGCCCTGT
GATCCCCACGGACCCTTTCACAAGCACACTATAAATAACATAACAAAAACTTTTCAGGAAAGAG
AACTGATAATCCCTCATAGAATTTACGGCCTTCTGGCAAACTCTGGCTCGTGTTTTAAAACCCA
GCCGCCACAGCTGCAGGGCCATATCCTAGTTTTTTTCTGACAATGAATAAGACTTCTTGGGGTC
AAACCCTGGATTTGATTAGTGGAAAATGAGAGGCTTTAGGAGCTTAGAACTCGTGACTATTGAA
AGCTTAGAACATCCCCCGCCCCCCAGGAAGGGAGGGCACCCCAGTATAGAGGTCTGTAAATGAA
CAGGGAAGGGCAAAGGAATTTGGTCCCAACCTCCCATCCAAACCCACACTTCTGTGAACACGGG
GCTTTTCACAGCTGTTAATCCATGCACGTCTCACCCCCATCGCCTGGAGACCAGTTTGCAGAAG
TCAGTAACTAGACTGAACACCACACCGTTTAGCCAGGCCTAGTACTCAAAAGCGCAACCTCATC
CCAACGCTAGAGATTTTGGACCGTCTGCTGCTCTCTGGAGCCCCCTGCCGGCCGTGGAGGAAAT
GGAGCTAAGAAGACCTACAGTTCCCTCTCAGGTCCTTAGCTACAAGAGTTCCAGTTTAGCTCAG
GAGGCTTTGTCCCGCCGACTGAAGATCCTATCCGGGACCCGGTGTCCTCGGCCTCTGCACTCCA
TTCTCACGTGAGGTTTAGTGTAGTCTGGGTTCCTCACCATGCACTGTATTTTTCGCTGCTTCCG
GGCGCCCAGCGAGACTATGGATCAGGAACACCAACATCACTCCCGGTCACGCAGAGGACACAGG
GCGGAGAATTGCAAAAGGAGAAGAGGTGGGAAGGGGAGGGAGCACTGCCCAGCCTGGCAACCTG
ACCTTCTAGGGCTAACCACTCCCCGCAGAGACACAGCCGAGGGACTATGAGAGAGGTAGGTGAC
CGGTGGCCTAGGCACCAATCAGTCCCGTTGTCCCTACTGGGAAGCTACCGGCTTCGCATTACAG
CATCTCAAAGCCATTGGCTAAGTCGTGTCCAAGAGGGACTTGACCGGGACTCCAAGAATCTCAG
CCGCTGTCCTTCTTGTCCTGTTTTCCTACATAAATGTCTGGAGCAATTTTTGCGCCTCTGGAGG
GCCTAGGTGCCCTGGATGCTGCAAGTGGCCATCCACTCGTGTGTCCACTGTGCCACACACAGTA
CGAGCACCCGTGCCTGCTGGACTGTTTCCACGACTTCTGCGCTGGCTGCTTGCGTGGCCGGGCC
ACCGATGGCCGCCTGTCCTGCCCACTGTGCCAGCATCAGACCCTGGTGAAGGGGCCCAGTGGCC
TCCCTCCAGCGGACCGGCTGCTGCAGTTCCTGGTGGACAGCTCCGGGGATGGCATAGAAGCTGT
GCACTGTGCCAACTGTGACCTGGAGTGCAGCAAGCAGGACGCAGAGACCACGTACTTCTGCAAC
ACCTGCGGGCAGCCCCTGTGCGCGCGCTGCCGCGAAGAGACGCACCGCGCGCGCATGTTCGCGC
GCCACGACATTGTAGCCCTGGGCCAGCGCAGCCGGGACTTCATCCAGAAGTGTAAGCTGCATTC
GGAGCCCTACATCGTGTTTTCTACCGACAAGAAGTCGCTGCTGTGCATCCGCTGCTTTCGGGAC
ATGCAGGGGGAGAGCCGGGCCCACTGTGTGGACCTGGAGTCAGCTTATGTGCAAGGTTGCGAGC
GGCTGGAGCAGGCAGTGCTGGCAGTGAAGGCTCTGCAGACCGCCACGAAAGAGGCCATCGCGCT
GCTACAGGCCATGGTGGAGGAGGTGAGGCACAGCGCCGCTGAGGAGGAGGCTGCCATCCACGCA
CTCTTTGGCAGCATGCAGGACAGACTGGCAGAGAGGAAAGCATTACTGCTGCAGACTGTGCAGA
GCCAATATGAAGAGAAGGACAAAGCCTTCAAGGAACAGCTGACCCACCTGGCCTCCTTGCTGCC
CACCCTGCAGGTTCATCTGGTCATCTGCTCTTCCTTTCTCAGCTTGGCCAGCAAAGCCGAGTTT
CTGGATCTGGGTTATGAGCTGATGGAGAGACTTCAAGGCATAGTCACGCGGCCGCATCGTCTAA
GACCGGCTCAGAGCAGCAAGATCGCCAGCGACCACCGCGCAGAATTCGCGCGCTGCCTGGAGCC
GCTTCTGCTGCTGGGGCCCCGCCGCGCTGTGTCCACCGTGGGCGGCGCCAACACGTTGGCAGGG
GGCTCAAGCCCTAAGGTGTTGAAGACACAGAGCTGTCCCTCCCCCGTGGGAAAAATGTCAGGGT
CACCTGTCCAGAAACCCTCGCCACACCGTTTCATTAGCACGAAGGTGCTCTTGGCCGAGGGCGA
GGACACACCCTTCACGGAGCACTGCCGCCATTATGAGGATTCCTATCGGGGTCTGCAGCTGGAG
GTGCAGAACCTGAAGGACCAGGTCCAGGAACTGCACCGAGACCTCACCAAGCACCACTCCCTCA
TCAAGGCGGAGATCATGGGGGATATCCTGCACAGGTCCCTGCTGTTGGACACGCGGATCGCTTC
TGAGTATGCCTCCATGGAAGGCATGAGAGCCATCTTCCAAGAGATTTGGGAAGACTCCTACCAG
CGAGTAGCTACCCAGCAGGAGATTTATGAAGCCCAGCTCCATGACCTTCTCCAGCTGAAGCAGG
AGAATGCCTATCTCACCACCATCACCAAGCAGATCACGCCCTATATCCGCTCCATTGCCAGGGT
GAAGGAACGACTGGAGCCCAGGTTCCAGGGGCCTGTGGCTGAGCACTCAGAGCATCGGCAGAAC
CTGTATGATGAGACCCCAGCCAGGACTGACCCAGGATGCACCACTGAGAAGAGAGACAAGGCTT
CTGAGCCCAGTGGAAGCAGCTGGGCCCTGAGCGGCCTCCCCGAAGGGCCTTCACTAAACAACCA
AGACCACCTCAGACCCAAGTTGGAAGCTGGAGATGAGGGGTGGAGAGCTGGCTCAGGGTCTAAA
GGGGCTTGCTACCAAGCCTGACAACCTGAACCAACATAGAAGGAAAGAACTAACTCCCACGCAC
ATACGGGATAAAGGAAGCACGTAAAATCTCCCGGTGAAGGTGACTTCCCACATGGAGAGAGCAG
ATTAGTAACCGGGTCCCAGTGAGCTGGGACCAGGCAGTCAGCTTTCTCAAGACTGGTACACTGG
CTGTGGGCACGGTTCAGAGGTTAGAAGCAATGCTGCTCTTTCAGAGGACCTGGGGTTTGAACCC
CAACACCCACAGGGTGCTCACAACCATCTGTTAAGTACAGTCTAGGGCGTCTGACACCCTCTTC
TGGCCTCCATGGGTACCACGTATGTAGCACACAGATGTACATGCAAGTGAAATATATACAAAAA
TAAATCTTAAAAAGTTTTAA

hide sequence

RefSeq Acc Id:

XM_008764392 ⟹ XP_008762614

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI
Rnor_6.0	5	169,486,253 - 169,500,451 (-)	NCBI

Sequence:

show sequence

CCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGAGCCATCTGTTCAGCCCTAACTCTTTAATT
GCTATTGTAACACTGAATTATCCCACAGAGCAAAAGTCATCCAGAGCTGAGAAGGCCCTTAAAA
CAACCTGTAGGGCCAGCAGTAGGGCTCAGCAGGTAGCAGGCGCTTGCTGCTACAAGGCCTGATG
ACCTGAGTTCGACCCCAAGACTTTGATGGAGGAGAGAAGGAGAGACTTCTGCGAGTTGCCCTGT
GATCCCCACGGACCCTTTCACAAGCACACTATAAATAACATAACAAAAACTTTTCAGGAAAGAG
AACTGATAATCCCTCATAGAATTTACGGCCTTCTGGCAAACTCTGGCTCGTGTTTTAAAACCCA
GCCGCCACAGCTGCAGGGCCATATCCTAGTTTTTTTCTGACAATGAATAAGACTTCTTGGGGTC
AAACCCTGGATTTGATTAGTGGAAAATGAGAGGCTTTAGGAGCTTAGAACTCGTGACTATTGAA
AGCTTAGAACATCCCCCGCCCCCCAGGAAGGGAGGGCACCCCAGTATAGAGGTCTGTAAATGAA
CAGGGAAGGGCAAAGGAATTTGGTCCCAACCTCCCATCCAAACCCACACTTCTGTGAACACGGG
GCTTTTCACAGCTGTTAATCCATGCACGTCTCACCCCCATCGCCTGGAGACCAGTTTGCAGAAG
TCAGTAACTAGACTGAACACCACACCGTTTAGCCAGGCCTAGTACTCAAAAGCGCAACCTCATC
CCAACGCTAGAGATTTTGGACCGTCTGCTGCTCTCTGGAGCCCCCTGCCGGCCGTGGAGGAAAT
GGAGCTAAGAAGACCTACAGTTCCCTCTCAGGTCCTTAGCTACAAGAGTTCCAGTTTAGCTCAG
GAGGCTTTGTCCCGCCGACTGAAGATCCTATCCGGGACCCGGTGTCCTCGGCCTCTGCACTCCA
TTCTCACGTGAGGTTTAGTGTAGTCTGGGTTCCTCACCATGCACTGTATTTTTCGCTGCTTCCG
GGCGCCCAGCGAGACTATGGATCAGGAACACCAACATCACTCCCGGTCACGCAGAGGACACAGG
GCGGAGAATTGCAAAAGGAGAAGAGGTGGGAAGGGGAGGGAGCACTGCCCAGCCTGGCAACCTG
ACCTTCTAGGGCTAACCACTCCCCGCAGAGACACAGCCGAGGGACTATGAGAGAGGTAGGTGAC
CGGTGGCCTAGGCACCAATCAGTCCCGTTGTCCCTACTGGGAAGCTACCGGCTTCGCATTACAG
CATCTCAAAGCCATTGGCTAAGTCGTGTCCAAGAGGGACTTGACCGGGACTCCAAGAATCTCAG
CCGCTGTCCTTCTTGTCCTGTTTTCCTACATAAATGTCTGGAGCAATTTTTGCGCCTCTGGAGG
GCCTAGGTGCCCTGGATGCTGCAAGTGGCCATCCACTCGTGTGTCCACTGTGCCACACACAGTA
CGAGCACCCGTGCCTGCTGGACTGTTTCCACGACTTCTGCGCTGGCTGCTTGCGTGGCCGGGCC
ACCGATGGCCGCCTGTCCTGCCCACTGTGCCAGCATCAGACCCTGGTGAAGGGGCCCAGTGGCC
TCCCTCCAGCGGACCGGCTGCTGCAGTTCCTGGTGGACAGCTCCGGGGATGGCATAGAAGCTGT
GCACTGTGCCAACTGTGACCTGGAGTGCAGCAAGCAGGACGCAGAGACCACGTACTTCTGCAAC
ACCTGCGGGCAGCCCCTGTGCGCGCGCTGCCGCGAAGAGACGCACCGCGCGCGCATGTTCGCGC
GCCACGACATTGTAGCCCTGGGCCAGCGCAGCCGGGACTTCATCCAGAAGTGTAAGCTGCATTC
GGAGCCCTACATCGTGTTTTCTACCGACAAGAAGTCGCTGCTGTGCATCCGCTGCTTTCGGGAC
ATGCAGGGGGAGAGCCGGGCCCACTGTGTGGACCTGGAGTCAGCTTATGTGCAAGGTTGCGAGC
GGCTGGAGCAGGCAGTGCTGGCAGTGAAGGCTCTGCAGACCGCCACGAAAGAGGCCATCGCGCT
GCTACAGGCCATGGTGGAGGAGGTGAGGCACAGCGCCGCTGAGGAGGAGGCTGCCATCCACGCA
CTCTTTGGCAGCATGCAGGACAGACTGGCAGAGAGGAAAGCATTACTGCTGCAGACTGTGCAGA
GCTTGGCCAGCAAAGCCGAGTTTCTGGATCTGGGTTATGAGCTGATGGAGAGACTTCAAGGCAT
AGTCACGCGGCCGCATCGTCTAAGACCGGCTCAGAGCAGCAAGATCGCCAGCGACCACCGCGCA
GAATTCGCGCGCTGCCTGGAGCCGCTTCTGCTGCTGGGGCCCCGCCGCGCTGTGTCCACCGTGG
GCGGCGCCAACACGTTGGCAGGGGGCTCAAGCCCTAAGGTGTTGAAGACACAGAGCTGTCCCTC
CCCCGTGGGAAAAATGTCAGGGTCACCTGTCCAGAAACCCTCGCCACACCGTTTCATTAGCACG
AAGGTGCTCTTGGCCGAGGGCGAGGACACACCCTTCACGGAGCACTGCCGCCATTATGAGGATT
CCTATCGGGGTCTGCAGCTGGAGGTGCAGAACCTGAAGGACCAGGTCCAGGAACTGCACCGAGA
CCTCACCAAGCACCACTCCCTCATCAAGGCGGAGATCATGGGGGATATCCTGCACAGGTCCCTG
CTGTTGGACACGCGGATCGCTTCTGAGTATGCCTCCATGGAAGGCATGAGAGCCATCTTCCAAG
AGATTTGGGAAGACTCCTACCAGCGAGTAGCTACCCAGCAGGAGATTTATGAAGCCCAGCTCCA
TGACCTTCTCCAGCTGAAGCAGGAGAATGCCTATCTCACCACCATCACCAAGCAGATCACGCCC
TATATCCGCTCCATTGCCAGGGTGAAGGAACGACTGGAGCCCAGGTTCCAGGGGCCTGTGGCTG
AGCACTCAGAGCATCGGCAGAACCTGTATGATGAGACCCCAGCCAGGACTGACCCAGGATGCAC
CACTGAGAAGAGAGACAAGGCTTCTGAGCCCAGTGGAAGCAGCTGGGCCCTGAGCGGCCTCCCC
GAAGGGCCTTCACTAAACAACCAAGACCACCTCAGACCCAAGTTGGAAGCTGGAGATGAGGGGT
GGAGAGCTGGCTCAGGGTCTAAAGGGGCTTGCTACCAAGCCTGACAACCTGAACCAACATAGAA
GGAAAGAACTAACTCCCACGCACATACGGGATAAAGGAAGCACGTAAAATCTCCCGGTGAAGGT
GACTTCCCACATGGAGAGAGCAGATTAGTAACCGGGTCCCAGTGAGCTGGGACCAGGCAGTCAG
CTTTCTCAAGACTGGTACACTGGCTGTGGGCACGGTTCAGAGGTTAGAAGCAATGCTGCTCTTT
CAGAGGACCTGGGGTTTGAACCCCAACACCCACAGGGTGCTCACAACCATCTGTTAAGTACAGT
CTAGGGCGTCTGACACCCTCTTCTGGCCTCCATGGGTACCACGTATGTAGCACACAGATGTACA
TGCAAGTGAAATATATACAAAAATAAATCTTAAAAAGTTTTAA

hide sequence

RefSeq Acc Id:

XM_039111530 ⟹ XP_038967458

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI

RefSeq Acc Id:

XM_039111531 ⟹ XP_038967459

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI

RefSeq Acc Id:

XM_039111532 ⟹ XP_038967460

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,815,351 - 162,828,325 (-)	NCBI

RefSeq Acc Id:

XM_039111533 ⟹ XP_038967461

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,815,351 - 162,827,422 (-)	NCBI

RefSeq Acc Id:

XM_039111534 ⟹ XP_038967462

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,820,764 - 162,828,325 (-)	NCBI

RefSeq Acc Id:

XM_039111535 ⟹ XP_038967463

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	162,820,498 - 162,828,325 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_001075996	(Get FASTA)	NCBI Sequence Viewer
	XP_008762614	(Get FASTA)	NCBI Sequence Viewer
	XP_038967458	(Get FASTA)	NCBI Sequence Viewer
	XP_038967459	(Get FASTA)	NCBI Sequence Viewer
	XP_038967460	(Get FASTA)	NCBI Sequence Viewer
	XP_038967461	(Get FASTA)	NCBI Sequence Viewer
	XP_038967462	(Get FASTA)	NCBI Sequence Viewer
	XP_038967463	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_001075996 ⟸ XM_001075996
- Peptide Label:	isoform X1
- UniProtKB:	D4A306 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGAIFAPLEGLGALDAASGHPLVCPLCHTQYEHPCLLDCFHDFCAGCLRGRATDGRLSCPLCQ HQTLVKGPSGLPPADRLLQFLVDSSGDGIEAVHCANCDLECSKQDAETTYFCNTCGQPLCARCR EETHRARMFARHDIVALGQRSRDFIQKCKLHSEPYIVFSTDKKSLLCIRCFRDMQGESRAHCVD LESAYVQGCERLEQAVLAVKALQTATKEAIALLQAMVEEVRHSAAEEEAAIHALFGSMQDRLAE RKALLLQTVQSQYEEKDKAFKEQLTHLASLLPTLQVHLVICSSFLSLASKAEFLDLGYELMERL QGIVTRPHRLRPAQSSKIASDHRAEFARCLEPLLLLGPRRAVSTVGGANTLAGGSSPKVLKTQS CPSPVGKMSGSPVQKPSPHRFISTKVLLAEGEDTPFTEHCRHYEDSYRGLQLEVQNLKDQVQEL HRDLTKHHSLIKAEIMGDILHRSLLLDTRIASEYASMEGMRAIFQEIWEDSYQRVATQQEIYEA QLHDLLQLKQENAYLTTITKQITPYIRSIARVKERLEPRFQGPVAEHSEHRQNLYDETPARTDP GCTTEKRDKASEPSGSSWALSGLPEGPSLNNQDHLRPKLEAGDEGWRAGSGSKGACYQA hide sequence

RefSeq Acc Id:

XP_008762614 ⟸ XM_008764392

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSGAIFAPLEGLGALDAASGHPLVCPLCHTQYEHPCLLDCFHDFCAGCLRGRATDGRLSCPLCQ
HQTLVKGPSGLPPADRLLQFLVDSSGDGIEAVHCANCDLECSKQDAETTYFCNTCGQPLCARCR
EETHRARMFARHDIVALGQRSRDFIQKCKLHSEPYIVFSTDKKSLLCIRCFRDMQGESRAHCVD
LESAYVQGCERLEQAVLAVKALQTATKEAIALLQAMVEEVRHSAAEEEAAIHALFGSMQDRLAE
RKALLLQTVQSLASKAEFLDLGYELMERLQGIVTRPHRLRPAQSSKIASDHRAEFARCLEPLLL
LGPRRAVSTVGGANTLAGGSSPKVLKTQSCPSPVGKMSGSPVQKPSPHRFISTKVLLAEGEDTP
FTEHCRHYEDSYRGLQLEVQNLKDQVQELHRDLTKHHSLIKAEIMGDILHRSLLLDTRIASEYA
SMEGMRAIFQEIWEDSYQRVATQQEIYEAQLHDLLQLKQENAYLTTITKQITPYIRSIARVKER
LEPRFQGPVAEHSEHRQNLYDETPARTDPGCTTEKRDKASEPSGSSWALSGLPEGPSLNNQDHL
RPKLEAGDEGWRAGSGSKGACYQA

hide sequence

RefSeq Acc Id:

ENSRNOP00000047020 ⟸ ENSRNOT00000046552

RefSeq Acc Id:	XP_038967458 ⟸ XM_039111530
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038967460 ⟸ XM_039111532
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038967459 ⟸ XM_039111531
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038967461 ⟸ XM_039111533
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038967463 ⟸ XM_039111535
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038967462 ⟸ XM_039111534
- Peptide Label:	isoform X7

Protein Domains

B box-type RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A306-F1-model_v2	AlphaFold	D4A306	1-635	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694316

Promoter ID:

EPDNEW_R4828

Type:

single initiation site

Name:

Rnf207_1

Description:

ring finger protein 207

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	169,499,282 - 169,499,342	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1586262	AgrOrtholog
BioCyc Gene	G2FUF-39014	BioCyc
Ensembl Genes	ENSRNOG00000033722	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000047020	ENTREZGENE
	ENSRNOP00000047020.3	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000046552	ENTREZGENE
	ENSRNOT00000046552.6	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	Actin interacting protein 3, C-terminal domain	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	RNF207	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
	Znf_C3HC4_RING-type	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:691246	UniProtKB/TrEMBL
NCBI Gene	691246	ENTREZGENE
PANTHER	PTHR22635	UniProtKB/TrEMBL
	RING FINGER PROTEIN 207	UniProtKB/TrEMBL
Pfam	zf-B_box	UniProtKB/TrEMBL
	zf-C3HC4	UniProtKB/TrEMBL
PhenoGen	Rnf207	PhenoGen
PROSITE	ZF_BBOX	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	BBOX	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	D4A306	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Rnf207	ring finger protein 207	LOC691246	similar to tripartite motif-containing 56	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC691246	similar to tripartite motif-containing 56	LOC686983	similar to tripartite motif-containing 56	Data Merged	1643240	APPROVED
2006-11-20	LOC686983	similar to tripartite motif-containing 56			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC691246	similar to tripartite motif-containing 56			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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