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ONTOLOGY REPORT - ANNOTATIONS


Term:left/right pattern formation
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Accession:GO:0060972 term browser browse the term
Definition:The pattern specification process that results in the subdivision of the left/right axis in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.



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left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cluap1 clusterin associated protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5523142 (MGI:5509110|PMID:23742838)
Ensembl
RGD
PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:11,588,017...11,619,711
JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 NOT|acts_upstream_of_or_within ISO MGI:3512139 (MGI:4888062|PMID:21203428) RGD PMID:21203428 MGI:4888062 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA
(PMID:19944400)
GO_REF:0000107
RGD
Ensembl
PMID:19944400 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313
JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr 1:244,408,710...244,426,891
Ensembl chr 1:244,408,785...244,426,888
JBrowse link
G Foxj1 forkhead box J1 acts_upstream_of_or_within ISO MGI:2158221 (MGI:2156098|PMID:10873152) RGD PMID:10873152 MGI:2156098 NCBI chr10:101,566,299...101,570,249
Ensembl chr10:101,566,304...101,570,237
JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO MGI:3707373 (MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:3703110 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISO
ISS
(PMID:23063620)
(MGI:5551355|PMID:24052814)
GO_REF:0000024
RGD
CAFA
PMID:23063620 PMID:24052814 GO_REF:0000024 MGI:5551355 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613
JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO MGI:4151115 (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:4949891 (MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:4948830 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498
JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2183156 (MGI:3654743|PMID:16801545) RGD PMID:16801545 MGI:3654743 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Invs inversin acts_upstream_of_or_within ISO MGI:1856915 (MGI:892786|PMID:9192865) RGD PMID:9192865 MGI:892786 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:62,610,968...62,763,350
JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5551355|PMID:24052814)
GO_REF:0000107
CAFA
RGD
Ensembl
PMID:24052814 GO_REF:0000024 GO_REF:0000107 MGI:5551355 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1927227 (MGI:892786|PMID:9192865)
Ensembl
RGD
PMID:9192865 GO_REF:0000107 MGI:892786 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
G Pifo primary cilia formation acts_upstream_of_or_within ISO MGI:4819764 (MGI:4819432|PMID:20643351) RGD PMID:20643351 MGI:4819432 NCBI chr 2:193,475,785...193,493,092
Ensembl chr 2:193,475,782...193,493,139
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:3783941|PMID:17234970) RGD PMID:17234970 MGI:3783941 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B acts_upstream_of_or_within ISO MGI:3578151 (MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:5430243 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3578147 (MGI:4838374|PMID:20678497) RGD PMID:20678497 MGI:4838374 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Hspb11 heat shock protein family B (small), member 11 acts_upstream_of_or_within ISO MGI:4432759|MGI:5426875 (MGI:5426280|PMID:22595669) RGD PMID:22595669 MGI:5426280 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2682066|MGI:3829198 (MGI:3828200|PMID:18930042), (MGI:5430243|PMID:22554696)
GO_REF:0000107
RGD
Ensembl
PMID:18930042 PMID:22554696 GO_REF:0000107 MGI:3828200 MGI:5430243 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
JBrowse link
G Mns1 meiosis-specific nuclear structural 1 acts_upstream_of_or_within ISO MGI:5425368 (MGI:5318625|PMID:22396656) RGD PMID:22396656 MGI:5318625 NCBI chr 8:73,148,877...73,169,570
Ensembl chr 8:73,148,877...73,176,925
JBrowse link
G Notch1 notch receptor 1 involved_in ISO UniProtKB:O35516 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q01705 (MGI:2661305|PMID:12730124)
Ensembl
RGD
PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (MGI:4946570|PMID:21307093) RGD PMID:21307093 MGI:4946570 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137553 (MGI:1267118|PMID:9636176)
Ensembl
RGD
PMID:9636176 GO_REF:0000107 MGI:1267118 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    multicellular organismal process 9104
      pattern specification process 503
        regionalization 391
          left/right pattern formation 27
            embryonic heart tube left/right pattern formation 7
            left/right axis specification 14
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        multicellular organism development 5800
          pattern specification process 503
            regionalization 391
              left/right pattern formation 27
                embryonic heart tube left/right pattern formation 7
                left/right axis specification 14
paths to the root