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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| autosomal recessive polycystic kidney disease | ISO | RGD:1344571 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:28530676 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology Annotations
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | RGD automated data pipeline |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
| 5. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
References - uncuratedComparative Map Data| Dzip1l (Rattus norvegicus - Norway rat) |
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| DZIP1L (Homo sapiens - human) |
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| Dzip1l (Mus musculus - house mouse) |
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| Dzip1l (Chinchilla lanigera - long-tailed chinchilla) |
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| DZIP1L (Pan paniscus - bonobo/pygmy chimpanzee) |
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| DZIP1L (Canis lupus familiaris - dog) |
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| Dzip1l (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| DZIP1L (Sus scrofa - pig) |
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| DZIP1L (Chlorocebus sabaeus - African green monkey) |
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| Dzip1l (Heterocephalus glaber - naked mole-rat) |
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Position Markers| RH136812 |
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| RH139924 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 28 | 4 | 4 | 4 | 56 | 25 | 31 | 11 | |||||
| Low | 3 | 15 | 48 | 32 | 19 | 32 | 8 | 11 | 18 | 10 | 10 | 8 | |
| Below cutoff | 5 | 5 | 5 |
Nucleotide Sequences| RefSeq Transcripts | NM_001014095 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006243626 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006243627 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008766526 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008766527 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07071290 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07071291 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056617 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056618 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056619 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01056620 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC083786 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000019902 ⟹ ENSRNOP00000019902 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000090299 ⟹ ENSRNOP00000074346 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001014095 ⟹ NP_001014117 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
CTGGCGGTGAGGCTGCAGCCTGGAGCTAAGCATGGTCCTCTTTCAGCTCCTTGGCCAGTGGCCThide sequence |
| RefSeq Acc Id: | XM_006243626 ⟹ XP_006243688 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGGGGTGGGGGTGGGGAGCACTGCAGACCCCAGTCCTGAGCTACTGGCGAGGAGAGAGGCGCAGhide sequence |
| RefSeq Acc Id: | XM_006243627 ⟹ XP_006243689 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GATGTGGCAACCCCCAAGACCTCCAGTCACCAGCCCCTGCTCCGGGTGACCCCTAGACTGACCChide sequence |
| RefSeq Acc Id: | XM_008766526 ⟹ XP_008764748 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CCACCTTTATGGGGGTCCCTGGGATCTAGCTCAGGTCACCAGAATTATGCGGTTTATACTTGCChide sequence |
| RefSeq Acc Id: | XM_008766527 ⟹ XP_008764749 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CACCTTTATGGGGGTCCCTGGGATCTAGCTCAGGTCACCAGAATTATGCGGTTTATACTTGCCChide sequence |
Protein Sequences| Protein RefSeqs | NP_001014117 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006243688 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006243689 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008764748 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008764749 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH83786 | (Get FASTA) | NCBI Sequence Viewer |
| EDL77434 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL77435 | (Get FASTA) | NCBI Sequence Viewer | |
| Q5XIA0 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_001014117 ⟸ NM_001014095 |
| - UniProtKB: | Q5XIA0 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTFhide sequence |
| RefSeq Acc Id: | XP_006243688 ⟸ XM_006243626 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTFhide sequence |
| RefSeq Acc Id: | XP_006243689 ⟸ XM_006243627 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTFhide sequence |
| RefSeq Acc Id: | XP_008764748 ⟸ XM_008766526 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MVLFQLLGQWPWWHSTPVVSPEPLLPMQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRIhide sequence |
| RefSeq Acc Id: | XP_008764749 ⟸ XM_008766527 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MVLFQLLGQWPWWHSTPVVSPEPLLPMQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRIhide sequence |
| RefSeq Acc Id: | ENSRNOP00000074346 ⟸ ENSRNOT00000090299 |
| RefSeq Acc Id: | ENSRNOP00000019902 ⟸ ENSRNOT00000019902 |
TranscriptomePromoters| RGD ID: | 13696220 | ||||||||
| Promoter ID: | EPDNEW_R6738 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | Dzip1l_1 | ||||||||
| Description: | DAZ interacting zinc finger protein 1-like | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Sequence Variants (Rnor 6.0)
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Damaging Variants| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 107309097 | 107309098 | T | A | snv | LE/Stm (KyushuU) |
| 8 | 107321148 | 107321149 | C | T | snv | ZFDM (KyushuU), SBH/Ygl (KNAW), F344/NCrl (KNAW), FHL/EurMcwi (KNAW), NIG-III/Hok (KyushuU), LH/MavRrrc (KNAW), F344/NRrrc (Illumina) (KNAW), SR/JrHsd (MCW), LE/Stm (SOLiD) (KNAW), BDIX.Cg-Tal/NemOda (KyushuU), SR/JrHsd (KNAW), F344/NRrrc (SOLiD) (KNAW), FHH/EurMcwi (KNAW), LE/Stm (Illumina) (KNAW), F344/NSlc (KyushuU), F344/Stm (KyushuU), BDIX/NemOda (KyushuU), SS/JrHsdMcwi (MCW), LN/MavRrrc (KNAW), BUF/MNa (KyushuU), F344/Jcl (KyushuU), LL/MavRrrc (KNAW), F344/DuCrlCrlj (KyushuU), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), DOB/Oda (KyushuU), SBH/Ygl (MCW), F344/NHsd (KNAW) |
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 107897393 | 107897394 | C | T | snv | CDS, SS/JrHsdMcwi (MCW), SBH/Ygl (MCW), SS/Jr (RGD), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), LE/Stm (RGD), FHL/EurMcwi (RGD), SBH/Ygl (RGD), SS/JrHsdMcwi (RGD), SR/JrHsd (MCW), LN/MavRrrc (RGD), SR/JrHsd (RGD), F344/NRrrc (MCW) |
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 8 | 104522775 | 104522776 | C | T | snv | F344/NRrrc (KNAW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MDC), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MDC), LE/Stm (KNAW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW) |
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1311430 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000014746 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000019902 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000074346 | UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000019902 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000090299 | UniProtKB/Swiss-Prot | |
| IMAGE_CLONE | IMAGE:7097259 | IMAGE-MGC_LOAD |
| InterPro | DZIP1_N | UniProtKB/Swiss-Prot |
| Znf_C2H2_type | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:315952 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:94765 | IMAGE-MGC_LOAD |
| NCBI Gene | 315952 | ENTREZGENE |
| Pfam | Dzip-like_N | UniProtKB/Swiss-Prot |
| PhenoGen | Dzip1l | PhenoGen |
| PROSITE | ZINC_FINGER_C2H2_1 | UniProtKB/Swiss-Prot |
| ZINC_FINGER_C2H2_2 | UniProtKB/Swiss-Prot | |
| UniGene | Rn.104060 | ENTREZGENE |
| UniProt | DZI1L_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2013-06-05 | Dzip1l | DAZ interacting zinc finger protein 1-like | Dzip1l | DAZ interacting protein 1-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-03-30 | Dzip1l | DAZ interacting protein 1-like | RGD1311430 | similar to hypothetical protein FLJ32844 | Symbol and Name updated | 1299863 | APPROVED |
| 2005-12-06 | RGD1311430 | similar to hypothetical protein FLJ32844 | RGD1311430_predicted | similar to hypothetical protein FLJ32844 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
| 2005-01-20 | RGD1311430_predicted | similar to hypothetical protein FLJ32844 (predicted) | LOC315952_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
| 2005-01-12 | LOC315952_predicted | similar to hypothetical protein FLJ32844 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Dzip1l | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1311430 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-07-28 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
