Memor13 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Memor13 (Memory QTL 13) Rattus norvegicus

Symbol: Memor13
Name: Memory QTL 13
RGD ID: 1598837
Previously known as: SR-1
Trait: exploratory behavior trait   (VT:0010471)    
Measurement Type: difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase   (CMO:0002678)    
LOD Score: 3.2
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X44,930,883 - 89,930,883RGD_MAPPER_PIPELINE
mRatBN7.2X41,052,407 - 146,860,749RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0X44,320,616 - 158,345,622RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0X44,619,917 - 154,597,545RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4X62,691,290 - 160,699,376RGDRGSC3.4
RGSC_v3.1X62,744,759 - 160,775,580RGD
Cross Type: intercross
Strains Crossed: SR/JrHsd SS/JrHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13Ratlearning disability  IDA 1581615 RGD 
Memor13RatMemory Disorders  IDA 1581615 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13Ratabnormal learning/memory/conditioning  IDA 1581615 RGD 
Memor13Ratabnormal social investigation  IDA 1581615 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13Ratdifference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase  IDA 1581615 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13Ratcontrol condition  IDA 1581615 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13Ratvisual assessment of in vivo video recording  IDA 1581615 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13RatSR/JrHsd  IEA 1581615 RGD 
Memor13RatSS/JrHsd  IEA 1581615 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Memor13Ratexploratory behavior trait  IDA 1581615 RGD 


#
Reference Title
Reference Citation
1. Genome-wide scan for quantitative trait loci influencing spatial navigation and social recognition memory in Dahl rats. Ruiz-Opazo N and Tonkiss J, Physiol Genomics. 2006 Jul 12;26(2):145-51.


1 to 20 of 1147 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
7651318Rpl17-ps15ribosomal protein L17, pseudogene 15X4119880941199356Rat
41260282LOC120099403U6 spliceosomal RNAX4120593841206041Rat
1562775Ykt6l1YKT6 v-SNARE like 1X4134558141346225Rat
41326583Ftl1-ps13ferritin light chain 1, pseudogene 13X4152092341521483Rat
1563868Tbl1xtransducin (beta)-like 1 X-linkedX4157455841731117Rat
1591711Cldn34eclaudin 34EX4174208441748930Rat
1590655Bnip3-ps3BCL2 interacting protein 3, pseudogene 3X4178225641782924Rat
1564076Prkxprotein kinase cAMP-dependent X-linked catalytic subunitX4182334941866844Rat
708571PbsnprobasinX4191434641929591Rat
621639Obp1fodorant binding protein I fX4195561841960681Rat
41279453Pargl2poly (ADP-ribose) glycohydrolase like 2X4198871341993954Rat
11461170LOC108348181odorant-binding protein-likeX4202110642028548Rat
41216075Anhxanomalous homeoboxX4208148542104977Rat
41042580Magea10-ps3MAGE family member A10, pseudogene 3X4214685342155934Rat
1359350Ptges3l1prostaglandin E synthase 3-like 1X4221520042224472Rat
3783Stssteroid sulfataseX4222513142233403Rat
1562200Pnpla4patatin like phospholipase domain containing 4X4231355442318451Rat
2318766Ptp4a1-ps4protein tyrosine phosphatase 4A1, pseudogene 4X4234274142344097Rat
1563234Ptgdrl1-ps1prostaglandin D2 receptor-like 1, pseudogene 1X4237364642392463Rat
40927558Crlf2l1cytokine receptor-like factor 2 like 1X4239220942393358Rat

1 to 20 of 1147 rows
1 to 20 of 847 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
36952DXRat11124X4105240741052531Ratregion
42438DXRat146200X4120338041203580Ratregion
33575DXMit5211X4120338041203591Ratregion
5068198AU047290198X4121042641210626Ratregion
39080DXRat59141X4127110941271247Ratregion
38374DXRat67236X4130444741304683Ratregion
1579169D10Chm172249X4150445441505454Ratregion
5507279fb15g12.x10X4152354341525160Ratregion
5507279fb15g12.x10X4152354341525172Ratregion
34961DXRat26150X4154653941546689Ratregion
5505314Tbl1x605X4172826241728867Ratregion
5086052AW529429183X4173014441730327Ratregion
5039484RH127732202X4182349941823701Ratregion
5085238BQ195742210X4185004441850254Ratregion
5044396RH130579185X4223311442233299Ratregion
5081873BI273967807X4231446742315274Ratregion
5077414RH139743199X4249447442494673Ratregion
45747DXGot34201X4286126642861467Ratregion
45746DXGot35193X4307795643078149Ratregion
45748DXGot33213X4322401343224226Ratregion
1 to 20 of 847 rows

Flank 1: (DXRat11)
Rat AssemblyChrPosition (strand)Source
GRCr8X44,930,883 - 44,931,007 (+)Marker Load Pipeline
mRatBN7.2X41,052,407 - 41,052,531 (+)MAPPER
Rnor_6.0X44,320,616 - 44,320,739NCBI
Rnor_5.0X44,619,917 - 44,620,040UniSTS
RGSC_v3.4X62,691,290 - 62,691,410RGD
RGSC_v3.4X62,691,291 - 62,691,414UniSTS
RGSC_v3.1X62,744,759 - 62,744,879RGD
CeleraX41,711,842 - 41,711,965UniSTS
RH 3.4 MapX575.2UniSTS
RH 3.4 MapX575.2RGD
RH 2.0 Map21465.1RGD
SHRSP x BN MapX14.89RGD
Peak: (DXRat32)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X93,956,491 - 93,956,666 (+)MAPPER
Rnor_6.0X101,333,032 - 101,333,206NCBI
Rnor_5.0X101,168,680 - 101,168,854UniSTS
RGSC_v3.4X117,994,236 - 117,994,410UniSTS
RGSC_v3.4X118,122,702 - 118,122,876UniSTS
RGSC_v3.4X118,122,640 - 118,123,026RGD
RGSC_v3.1X118,196,135 - 118,196,309RGD
CeleraX95,039,128 - 95,039,302UniSTS
RH 3.4 MapX44.5RGD
RH 3.4 MapX44.5UniSTS
RH 2.0 Map2121.2RGD
FHH x ACI MapX28.0RGD


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat

1 to 10 of 21 rows


Note Type Note Reference
qtl_cross_type intercross  
qtl_general parental S allele was responsible for decreased cognitive performance 1581615
qtl_statistics_details social-investigatory behavior involved direct contact while sniffing, nosing, close following, pawing, grooming or inspecting the body surface 1581615