Slc25a53 (solute carrier family 25, member 53) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc25a53 (solute carrier family 25, member 53) Rattus norvegicus
Analyze
Symbol: Slc25a53
Name: solute carrier family 25, member 53
RGD ID: 1591860
Description: Predicted to be integral component of membrane. Orthologous to human SLC25A53 (solute carrier family 25 member 53); INTERACTS WITH bisphenol A; decabromodiphenyl ether; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC679135; Mcart1l; MGC187490; mitochondrial carrier triple repeat 1-like; similar to mitochondrial carrier triple repeat 1; solute carrier family 25 member 53
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X100,306,917 - 100,319,555 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX100,306,915 - 100,319,863 (-)Ensembl
Rnor_6.0X107,622,504 - 107,632,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X107,500,505 - 107,512,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX101,134,275 - 101,146,918 (-)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Slc25a53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X100,306,917 - 100,319,555 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX100,306,915 - 100,319,863 (-)Ensembl
Rnor_6.0X107,622,504 - 107,632,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X107,500,505 - 107,512,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX101,134,275 - 101,146,918 (-)NCBICelera
Cytogenetic MapXq32NCBI
SLC25A53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X104,099,214 - 104,157,009 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX104,099,214 - 104,157,009 (-)EnsemblGRCh38hg38GRCh38
GRCh37X103,343,898 - 103,401,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X103,230,554 - 103,288,364 (-)NCBINCBI36hg18NCBI36
CeleraX103,818,515 - 103,876,331 (-)NCBI
Cytogenetic MapXq22.2NCBI
HuRefX92,971,723 - 93,029,129 (-)NCBIHuRef
CHM1_1X103,254,803 - 103,312,570 (-)NCBICHM1_1
T2T-CHM13v2.0X102,530,406 - 102,588,209 (-)NCBI
Slc25a53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,881,865 - 135,939,051 (-)NCBIGRCm39mm39
GRCm39 EnsemblX135,881,865 - 135,939,051 (-)Ensembl
GRCm38X136,981,116 - 137,038,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,981,116 - 137,038,302 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X133,515,655 - 133,572,841 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X133,515,655 - 133,572,839 (-)NCBImm8
CeleraX120,253,064 - 120,323,158 (-)NCBICelera
Cytogenetic MapXF1NCBI
Slc25a53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955548947,623 - 1,003,086 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955548947,623 - 1,008,085 (-)NCBIChiLan1.0ChiLan1.0
SLC25A53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X103,604,254 - 103,615,067 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX103,606,996 - 103,607,919 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X93,227,050 - 93,236,451 (-)NCBIMhudiblu_PPA_v0panPan3
SLC25A53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,444,715 - 77,454,682 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX77,446,280 - 77,447,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX63,640,405 - 63,650,597 (-)NCBI
ROS_Cfam_1.0X79,062,963 - 79,073,157 (-)NCBI
UMICH_Zoey_3.1X76,547,117 - 76,557,310 (-)NCBI
UNSW_CanFamBas_1.0X78,250,004 - 78,260,197 (-)NCBI
UU_Cfam_GSD_1.0X77,982,593 - 77,992,788 (-)NCBI
Slc25a53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,352,379 - 77,363,487 (-)NCBI
SpeTri2.0NW_00493649910,294,491 - 10,306,003 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,861,739 - 84,871,871 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X84,860,180 - 84,871,866 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,820,738 - 98,830,864 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,813,263 - 91,815,931 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606516,893,765 - 16,904,530 (-)NCBIVero_WHO_p1.0
Slc25a53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480313,031,732 - 13,039,898 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462480313,031,644 - 13,040,152 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI448995  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X100,307,065 - 100,307,195 (+)MAPPERmRatBN7.2
Rnor_6.0X107,622,653 - 107,622,782NCBIRnor6.0
Rnor_5.0X107,500,654 - 107,500,783UniSTSRnor5.0
CeleraX101,134,424 - 101,134,553UniSTS
RH140002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X100,307,071 - 100,307,278 (+)MAPPERmRatBN7.2
Rnor_6.0X107,622,659 - 107,622,865NCBIRnor6.0
Rnor_5.0X107,500,660 - 107,500,866UniSTSRnor5.0
CeleraX101,134,430 - 101,134,636UniSTS
MCART6  
Rat AssemblyChrPosition (strand)SourceJBrowse
CeleraX101,136,486 - 101,136,653UniSTS
UniSTS:238086  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X100,321,902 - 100,322,179 (+)MAPPERmRatBN7.2
Rnor_6.0X107,634,970 - 107,635,246NCBIRnor6.0
Rnor_5.0X107,514,540 - 107,514,816UniSTSRnor5.0
CeleraX101,149,279 - 101,149,555UniSTS
UniSTS:479053  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X100,321,479 - 100,322,108 (+)MAPPERmRatBN7.2
Rnor_6.0X107,634,547 - 107,635,175NCBIRnor6.0
Rnor_5.0X107,514,117 - 107,514,745UniSTSRnor5.0
CeleraX101,148,856 - 101,149,484UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000093992   ⟹   ENSRNOP00000092509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX100,306,917 - 100,316,341 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094538   ⟹   ENSRNOP00000095987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX100,306,917 - 100,319,863 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095393   ⟹   ENSRNOP00000095181
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX100,306,921 - 100,319,542 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118966   ⟹   ENSRNOP00000084805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX100,306,915 - 100,319,863 (-)Ensembl
RefSeq Acc Id: NM_001127602   ⟹   NP_001121074
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X100,306,917 - 100,319,542 (-)NCBI
Rnor_6.0X107,622,504 - 107,632,594 (-)NCBI
Rnor_5.0X107,500,505 - 107,512,866 (-)NCBI
CeleraX101,134,275 - 101,146,918 (-)RGD
Sequence:
RefSeq Acc Id: XM_039100048   ⟹   XP_038955976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X100,306,917 - 100,319,555 (-)NCBI
RefSeq Acc Id: XM_039100049   ⟹   XP_038955977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X100,306,917 - 100,319,546 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001121074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955977 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66437 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001121074   ⟸   NM_001127602
- UniProtKB: B2GUW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038955976   ⟸   XM_039100048
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955977   ⟸   XM_039100049
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000092509   ⟸   ENSRNOT00000093992
RefSeq Acc Id: ENSRNOP00000084805   ⟸   ENSRNOT00000118966
RefSeq Acc Id: ENSRNOP00000095987   ⟸   ENSRNOT00000094538
RefSeq Acc Id: ENSRNOP00000095181   ⟸   ENSRNOT00000095393

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591860 AgrOrtholog
BioCyc Gene G2FUF-1601 BioCyc
Ensembl Genes ENSRNOG00000069699 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000084805 ENTREZGENE
  ENSRNOP00000084805.1 UniProtKB/TrEMBL
  ENSRNOP00000092509.1 UniProtKB/TrEMBL
  ENSRNOP00000095181 ENTREZGENE
  ENSRNOP00000095181.1 UniProtKB/TrEMBL
  ENSRNOP00000095987 ENTREZGENE
  ENSRNOP00000095987.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000093992.1 UniProtKB/TrEMBL
  ENSRNOT00000094538 ENTREZGENE
  ENSRNOT00000094538.1 UniProtKB/TrEMBL
  ENSRNOT00000095393 ENTREZGENE
  ENSRNOT00000095393.1 UniProtKB/TrEMBL
  ENSRNOT00000118966 ENTREZGENE
  ENSRNOT00000118966.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383238 IMAGE-MGC_LOAD
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom UniProtKB/TrEMBL
KEGG Report rno:679135 UniProtKB/TrEMBL
MGC_CLONE MGC:187490 IMAGE-MGC_LOAD
NCBI Gene 679135 ENTREZGENE
Pfam Mito_carr UniProtKB/TrEMBL
PhenoGen Slc25a53 PhenoGen
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP Mitoch_carrier UniProtKB/TrEMBL
UniProt B2GUW8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-15 Slc25a53  solute carrier family 25, member 53  Mcart1l  mitochondrial carrier triple repeat 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-05 Mcart1l  mitochondrial carrier triple repeat 1-like  LOC679135  similar to mitochondrial carrier triple repeat 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC679135  similar to mitochondrial carrier triple repeat 1      Symbol and Name status set to provisional 70820 PROVISIONAL