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Gene: Actrt1 (actin-related protein T1) Rattus norvegicus

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Symbol:

Actrt1

Name:

actin-related protein T1

RGD ID:

1359559

Description:

Predicted to enable chromatin binding activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of smoothened signaling pathway. Predicted to be located in acrosomal vesicle. Predicted to be active in actin cytoskeleton and nucleus. Orthologous to human ACTRT1 (actin related protein T1); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); atrazine (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC302796; similar to actin-related protein T1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACTRT1 (actin related protein T1)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Actrt1 (actin-related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Actrt1 (actin related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACTRT1 (actin related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACTRT1 (actin related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Actrt1 (actin related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC100154405 (actin-related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Actrt1 (actin related protein T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ACTRT2 (actin related protein T2)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Actrt1 (actin-related protein T1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ACTRT1 (actin related protein T1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Arp53D	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	actrt2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	130,462,111 - 130,463,464 (+)	NCBI		GRCr8
mRatBN7.2	X	125,584,102 - 125,585,455 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	125,584,065 - 125,585,457 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	127,699,208 - 127,700,561 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	131,255,213 - 131,256,566 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	128,784,322 - 128,785,675 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	133,227,699 - 133,229,052 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	133,227,660 - 133,229,047 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	133,306,981 - 133,308,334 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	132,709,316 - 132,710,669 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	132,782,748 - 132,784,102 (+)	NCBI
Celera	X	124,561,722 - 124,563,075 (+)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Actrt1	Rat	autistic disorder		ISO	ACTRT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
Actrt1	Rat	autosomal hemophilia A		ISO	ACTRT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA A	ClinVar	PMID:31690835
Actrt1	Rat	factor VIII deficiency		ISO	ACTRT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Factor 8 deficiency and congenital	ClinVar	PMID:31690835
Actrt1	Rat	oculocerebrorenal syndrome		ISO	ACTRT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Lowe syndrome	ClinVar	PMID:17142121
Actrt1	Rat	spermatogenic failure 57		ISO	ACTRT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Male infertility with azoospermia or oligozoospermia due to single gene mutation	ClinVar	PMID:25741868
Actrt1	Rat	syndromic X-linked intellectual disability Lubs type		ISO	ACTRT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs type	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Actrt1	Rat	aflatoxin B1	decreases methylation	ISO	ACTRT1 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of ACTRT1 gene	CTD	PMID:27153756
Actrt1	Rat	atrazine	increases expression	ISO	ACTRT1 (Homo sapiens)	6480464	Atrazine results in increased expression of ACTRT1 mRNA	CTD	PMID:22378314
Actrt1	Rat	benzo[a]pyrene	decreases methylation	ISO	ACTRT1 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of ACTRT1 exon	CTD	PMID:27901495
Actrt1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ACTRT1 mRNA	CTD	PMID:25181051
Actrt1	Rat	valproic acid	increases methylation	ISO	ACTRT1 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ACTRT1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Actrt1	Rat	negative regulation of DNA-templated transcription	involved_in	ISS	UniProtKB:Q8TDG2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Actrt1	Rat	negative regulation of DNA-templated transcription	involved_in	ISO	ACTRT1 (Homo sapiens)	1624291	PMID:28869610	RGD	PMID:28869610
Actrt1	Rat	regulation of DNA-templated transcription	involved_in	IBA	PANTHER:PTN000748066 and UniProtKB:Q8TDG2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Actrt1	Rat	regulation of smoothened signaling pathway	involved_in	ISS	UniProtKB:Q8TDG2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Actrt1	Rat	regulation of smoothened signaling pathway	involved_in	ISO	ACTRT1 (Homo sapiens)	1624291	PMID:28869610	RGD	PMID:28869610

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Actrt1	Rat	acrosomal vesicle	located_in	ISS	UniProtKB:Q8TDG2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Actrt1	Rat	acrosomal vesicle	located_in	IEA	UniProtKB-SubCell:SL-0007	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Actrt1	Rat	acrosomal vesicle	located_in	ISO	ACTRT1 (Homo sapiens)	1624291	PMID:31429579	RGD	PMID:31429579
Actrt1	Rat	actin cytoskeleton	is_active_in	IBA	CGD:CAL0000191211 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Actrt1	Rat	cytoplasm	located_in	ISS	UniProtKB:Q8TDG2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Actrt1	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Actrt1	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Actrt1	Rat	cytoplasm	located_in	ISO	ACTRT1 (Homo sapiens)	1624291	PMID:28869610	RGD	PMID:28869610
Actrt1	Rat	cytoplasmic vesicle	located_in	IEA	UniProtKB-KW:KW-0968	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Actrt1	Rat	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Actrt1	Rat	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Actrt1	Rat	nucleus	located_in	ISO	ACTRT1 (Homo sapiens)	1624291	PMID:28869610	RGD	PMID:28869610
Actrt1	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Actrt1	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Actrt1	Rat	nucleus	is_active_in	IBA	PANTHER:PTN000748066 and UniProtKB:Q8TDG2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Actrt1	Rat	nucleus	located_in	ISS	UniProtKB:Q8TDG2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Actrt1	Rat	chromatin binding	enables	ISO	ACTRT1 (Homo sapiens)	1624291	PMID:28869610	RGD	PMID:28869610
Actrt1	Rat	chromatin binding	enables	IBA	PANTHER:PTN000748066 and UniProtKB:Q8TDG2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Actrt1	Rat	chromatin binding	enables	ISS	UniProtKB:Q8TDG2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:15489334	PMID:28869610

Actrt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	130,462,111 - 130,463,464 (+)	NCBI		GRCr8
mRatBN7.2	X	125,584,102 - 125,585,455 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	125,584,065 - 125,585,457 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	127,699,208 - 127,700,561 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	131,255,213 - 131,256,566 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	128,784,322 - 128,785,675 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	133,227,699 - 133,229,052 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	133,227,660 - 133,229,047 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	133,306,981 - 133,308,334 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	132,709,316 - 132,710,669 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	132,782,748 - 132,784,102 (+)	NCBI
Celera	X	124,561,722 - 124,563,075 (+)	NCBI		Celera
Cytogenetic Map	X	q35	NCBI

ACTRT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	128,050,962 - 128,052,403 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	128,050,962 - 128,052,403 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	127,184,941 - 127,186,382 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	127,012,622 - 127,014,058 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	127,568,642 - 127,570,083 (-)	NCBI		Celera
Cytogenetic Map	X	q25	NCBI
HuRef	X	116,588,275 - 116,589,716 (-)	NCBI		HuRef
CHM1_1	X	127,096,120 - 127,097,561 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	126,364,457 - 126,365,898 (-)	NCBI		T2T-CHM13v2.0

Actrt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	45,417,884 - 45,419,222 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	45,417,884 - 45,419,222 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	46,329,007 - 46,330,345 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	46,329,007 - 46,330,345 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	43,682,184 - 43,683,522 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	42,573,634 - 42,574,974 (+)	NCBI		MGSCv36	mm8
Celera	X	33,855,238 - 33,856,576 (+)	NCBI		Celera
Cytogenetic Map	X	A4	NCBI
cM Map	X	24.54	NCBI

Actrt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955473	6,849,016 - 6,850,445 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACTRT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	127,493,220 - 127,494,780 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	127,496,834 - 127,498,394 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	117,200,264 - 117,201,906 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	127,452,218 - 127,453,653 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	127,452,332 - 127,453,462 (-)	Ensembl	panpan1.1		panPan2

ACTRT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	99,375,867 - 99,377,318 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	99,375,977 - 99,377,110 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	85,545,247 - 85,546,692 (-)	NCBI		Dog10K_Boxer_Tasha

Actrt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	97,707,295 - 97,708,814 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	3,278,795 - 3,279,928 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	3,278,795 - 3,279,928 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100154405
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	104,937,348 - 104,938,481 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	104,936,448 - 104,941,473 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	120,283,645 - 120,285,115 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Actrt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624797	7,165,111 - 7,166,494 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Predicted Target Of

	Summary Value
Count of predictions:	82
Count of miRNA genes:	78
Interacting mature miRNAs:	79
Transcripts:	ENSRNOT00000004591
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
5685004	Bss104	Bone structure and strength QTL 104	3.9		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	X	113805422	126975220	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

appendage	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
4	7	3	3	2	2	2	8	2	7	19	1


RefSeq Transcripts	NM_001013961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004591 ⟹ ENSRNOP00000053759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	125,584,065 - 125,585,457 (+)	Ensembl
Rnor_6.0 Ensembl	X	133,227,660 - 133,229,047 (+)	Ensembl

RefSeq Acc Id:

NM_001013961 ⟹ NP_001013983

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	130,462,111 - 130,463,464 (+)	NCBI
mRatBN7.2	X	125,584,102 - 125,585,455 (+)	NCBI
Rnor_6.0	X	133,227,699 - 133,229,052 (+)	NCBI
Rnor_5.0	X	133,306,981 - 133,308,334 (+)	NCBI
RGSC_v3.4	X	132,709,316 - 132,710,669 (+)	RGD
Celera	X	124,561,722 - 124,563,075 (+)	RGD

Sequence:

show sequence

TTCATGGGCTAAGGACCTGCTCCTCTGGTGGACTGGTAACAACTCAGGTACCTTTCATTCTTCTGAGTGGTCCAACTAAACATTCTATTGCTGGCATATAAAAGATCAAATCCAGACATGCTTAATAC
GGCTAGATTAGATAATCCTGCCGTGATATTTGACAATGGTTCTGGACTCTGTAAAGTTGGAATTTCAGGAGAGATTGTACCCCGTCATGTCATCAACTCTGTTGTTGGCCACCCAAAATTCAACATCC
CATCTGCAAGATCCAATCGGAAAAGGTACTTTGTGGGAGAAGAAGCCCAGTGCATGTATGACGGTTTATACCTACACTATCCTATTGAGCGTGGACTGGTAACTAGATGGGATGACATGGAAAAACTG
TGGAAGGACCTTTTTGAGTGGGAGTTAGGAGTGAAACCCAATGAACAGCCAGTTTTCATGACTGAACCTTCCTTGAACCCACGAGAAACCCGAGAGAAGACCACAGAAATAATGTTTGAGAAATTTAA
TGTACCTGCCTTGTACCTTTGCAACCATGCAGTAGGAGCCCTGTGTGCTTCTGCCTGTATCACGGGCCTGGTACTGGACAGTGGAGATGGGGTTACTTGCACTGTTCCAATCTACGAAGGCTACTCTC
TTCCTCGTGCTATCACCAAGCTATACGTAGCAGGGAGAGATATCACAGAACACCTCACCCGACTCCTTCTTGCTAAAGGCTACACCTTCCCCTGCATCCTCAACAAAGCAGTGGTAGATGATATTAAA
GAGAAGTTATGTACTGTCTCCTGGGGCTCTAAAGATTCAGAAAAGTGCTATCAGCGGTCCCTAAGTGAATACAAGCTGCCAGATGGGAATACCATCCAGATGAGTGACCACCTCTGCCAGGTGCCTGA
AGTTCTTTTTACACCTGAACATCTAGGTATTCATGATTTAGGAATCTCAAAAATGGTCTGCAACAGCATCATGAAATGTGACACTGATATCCAGGAGAACCTGTTTGCCGAGATTGTGCTTTCTGGAG
GGACCACACTGTTTCCTGGGCTTCAGGATAGACTCCTGAAAGAACTAGAAGTTCTGGCTTTTGAGGGAACCCCTATCAAGATCACAGCTTCTCCAGACAGATGCTATTCAGCTTGGATTGGTGGATCT
GTCATGACATCCTTGACAACATTTAAGCAGATGTGGGTCACTGCTGAAGATTTCAAGGAGTACGGGGCATTTGTGGTGCAAAGAAAATGCTTTTAAGGACCACCAAACTCAGGGGACTCCTATAAATA
CCAGATGACAGGAGTATTGGTGGGGGTAATCATGCCATCATTCCTTGGCATTTAATAAAATAAAATTAAATCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

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Protein RefSeqs	NP_001013983	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83679	(Get FASTA)	NCBI Sequence Viewer
	EDM10900	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053759
	ENSRNOP00000053759.1
GenBank Protein	Q5XIK1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013983 ⟸ NM_001013961

- UniProtKB:

Q5XIK1 (UniProtKB/Swiss-Prot), A6JMN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLNTARLDNPAVIFDNGSGLCKVGISGEIVPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPRETREKTTEIMF
EKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPIYEGYSLPRAITKLYVAGRDITEHLTRLLLAKGYTFPCILNKAVVDDIKEKLCTVSWGSKDSEKCYQRSLSEYKLPDGNTIQMSDHLC
QVPEVLFTPEHLGIHDLGISKMVCNSIMKCDTDIQENLFAEIVLSGGTTLFPGLQDRLLKELEVLAFEGTPIKITASPDRCYSAWIGGSVMTSLTTFKQMWVTAEDFKEYGAFVVQRKCF

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Ensembl Acc Id:

ENSRNOP00000053759 ⟸ ENSRNOT00000004591

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIK1-F1-model_v2	AlphaFold	Q5XIK1	1-376	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13702006

Promoter ID:

EPDNEW_R12530

Type:

single initiation site

Name:

Actrt1_1

Description:

actin-related protein T1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	133,227,682 - 133,227,742	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-1157	BioCyc
Ensembl Genes	ENSRNOG00000003456	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004591	ENTREZGENE
	ENSRNOT00000004591.6	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.420.40	UniProtKB/Swiss-Prot
	Actin, Chain A, domain 4	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7135866	IMAGE-MGC_LOAD
InterPro	Actin	UniProtKB/Swiss-Prot
	ATPase_NBD	UniProtKB/Swiss-Prot
KEGG Report	rno:302796	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94530	IMAGE-MGC_LOAD
NCBI Gene	302796	ENTREZGENE
PANTHER	PTHR11937	UniProtKB/Swiss-Prot
Pfam	Actin	UniProtKB/Swiss-Prot
PhenoGen	Actrt1	PhenoGen
PRINTS	ACTIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003456	RatGTEx
SMART	ACTIN	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF53067	UniProtKB/Swiss-Prot
UniProt	A6JMN8	ENTREZGENE, UniProtKB/TrEMBL
	ACTT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Actrt1	actin-related protein T1	LOC302796	similar to actin-related protein T1	Symbol and Name updated	1299863	APPROVED
2005-07-29	LOC302796	similar to actin-related protein T1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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