Mir92a2 (microRNA 92a-2) - Rat Genome Database

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Gene: Mir92a2 (microRNA 92a-2) Rattus norvegicus
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Symbol: Mir92a2
Name: microRNA 92a-2
RGD ID: 2325583
Description: Predicted to enable mRNA 3'-UTR binding activity and mRNA base-pairing translational repressor activity. Predicted to be involved in several processes, including regulation of gene expression; regulation of inflammatory response; and regulation of sprouting angiogenesis. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; cellular response to mechanical stimulus; and long-term synaptic potentiation. Orthologous to human MIR92A2 (microRNA 92a-2); INTERACTS WITH cadmium atom; cadmium dichloride; 3-methylcholanthrene (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-92a-2; Mir92a-2; rno-mir-92a-2
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,342,928 - 137,343,019 (-)NCBIGRCr8
mRatBN7.2X132,421,942 - 132,422,033 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,421,942 - 132,422,033 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX134,584,350 - 134,584,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,166,291 - 138,166,382 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X135,731,995 - 135,732,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X140,117,249 - 140,117,340 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX140,117,249 - 140,117,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X140,167,096 - 140,167,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX131,322,157 - 131,322,248 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
B cell apoptotic process  (ISO)
cellular response to amino acid stimulus  (ISO)
cellular response to leukemia inhibitory factor  (ISO)
cellular response to low-density lipoprotein particle stimulus  (ISO)
cellular response to mechanical stimulus  (ISO)
long-term synaptic potentiation  (ISO)
miRNA-mediated gene silencing by inhibition of translation  (ISO)
miRNA-mediated post-transcriptional gene silencing  (ISO)
negative regulation of angiogenesis  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of B cell apoptotic process  (ISO)
negative regulation of blood vessel endothelial cell migration  (ISO)
negative regulation of endothelial cell proliferation  (ISO)
negative regulation of endothelial cell-matrix adhesion via fibronectin  (ISO)
negative regulation of gene expression  (ISO)
negative regulation of inflammatory response  (ISO)
negative regulation of nitric oxide biosynthetic process  (ISO)
negative regulation of sprouting angiogenesis  (ISO)
positive regulation of acute inflammatory response  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of interleukin-6 production  (ISO)
positive regulation of leukocyte adhesion to arterial endothelial cell  (ISO)
positive regulation of leukocyte adhesion to vascular endothelial cell  (ISO)
positive regulation of monocyte chemotactic protein-1 production  (ISO)
positive regulation of sprouting angiogenesis  (ISO)
regulation of gene expression  (ISO)
regulation of heart contraction  (ISO)
sensory perception of sound  (ISO)
vascular endothelial cell response to fluid shear stress  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:18329372   PMID:20403161   PMID:20439489   PMID:20548288   PMID:20708584   PMID:23646144   PMID:25858512   PMID:25959411  
PMID:32228467  


Genomics

Comparative Map Data
Mir92a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,342,928 - 137,343,019 (-)NCBIGRCr8
mRatBN7.2X132,421,942 - 132,422,033 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,421,942 - 132,422,033 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX134,584,350 - 134,584,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,166,291 - 138,166,382 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X135,731,995 - 135,732,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X140,117,249 - 140,117,340 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX140,117,249 - 140,117,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X140,167,096 - 140,167,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX131,322,157 - 131,322,248 (-)NCBICelera
Cytogenetic MapXq36NCBI
MIR92A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X134,169,538 - 134,169,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX134,169,538 - 134,169,612 (-)EnsemblGRCh38hg38GRCh38
GRCh37X133,303,568 - 133,303,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,131,233 - 133,131,307 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX133,690,401 - 133,690,475 (-)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX122,701,607 - 122,701,681 (-)NCBIHuRef
CHM1_1X133,215,264 - 133,215,338 (-)NCBICHM1_1
T2T-CHM13v2.0X132,494,685 - 132,494,759 (-)NCBIT2T-CHM13v2.0
Mir92-2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X51,830,715 - 51,830,805 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX51,830,715 - 51,830,805 (-)EnsemblGRCm39 Ensembl
GRCm38X52,741,838 - 52,741,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX52,741,838 - 52,741,928 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,095,015 - 50,095,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX40,158,058 - 40,158,148 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.15NCBI
MIR92A-2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X104,895,826 - 104,895,886 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX104,895,826 - 104,895,886 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX91,006,185 - 91,006,245 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X106,755,582 - 106,755,642 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX106,755,582 - 106,755,642 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X104,168,758 - 104,168,818 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X106,034,703 - 106,034,763 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X105,819,969 - 105,820,029 (-)NCBIUU_Cfam_GSD_1.0
MIR92A-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX110,113,717 - 110,113,796 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X110,113,717 - 110,113,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X126,199,512 - 126,199,591 (-)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:30592
Count of gene targets:11985
Count of transcripts:13142
Interacting mature miRNAs:rno-miR-92a-2-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system
High
Medium
Low 1 6 12 2 6 4
Below cutoff 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000053672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX132,421,942 - 132,422,033 (-)Ensembl
Rnor_6.0 EnsemblX140,117,249 - 140,117,340 (-)Ensembl
RefSeq Acc Id: NR_031852
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X137,342,928 - 137,343,019 (-)NCBI
mRatBN7.2X132,421,942 - 132,422,033 (-)NCBI
Rnor_6.0X140,117,249 - 140,117,340 (-)NCBI
Rnor_5.0X140,167,096 - 140,167,187 (-)NCBI
CeleraX131,322,157 - 131,322,248 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325583 AgrOrtholog
BioCyc Gene G2FUF-1022 BioCyc
Ensembl Genes ENSRNOG00000035549 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053672 ENTREZGENE
miRBase MI0000879 ENTREZGENE
NCBI Gene 100314016 ENTREZGENE
PhenoGen Mir92a2 PhenoGen
RatGTEx ENSRNOG00000035549 RatGTEx
RNAcentral URS0000329B12 RNACentral
  URS000075995C RNACentral
  URS000075B216 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir92a2  microRNA 92a-2  Mir92a-2  microRNA mir-92a-2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir92a-2  microRNA mir-92a-2      Symbol and Name status set to provisional 70820 PROVISIONAL