Tmem258l4 (transmembrane protein 258 like 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tmem258l4 (transmembrane protein 258 like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tmem258l4 (Ensembl: AABR07040624.1)
Name: transmembrane protein 258 like 4 (Ensembl:transmembrane protein 258 like 2)
RGD ID: 1595433
Description: Predicted to be involved in protein N-linked glycosylation. Predicted to be part of oligosaccharyltransferase complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC680191; similar to UPF0197 protein C11orf10 homolog; transmembrane protein 258-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X103,860,709 - 103,861,011 (-)NCBIGRCr8
mRatBN7.2X99,067,744 - 99,069,746 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,069,098 - 99,069,337 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X106,606,937 - 106,636,203 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X106,514,955 - 106,515,229 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X123,375,265 - 123,375,562 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Tmem258l4
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_063280429   ⟹   XP_063136499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X103,860,709 - 103,861,011 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063136499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070069.2
RefSeq Acc Id: XP_063136499   ⟸   XM_063280429
- UniProtKB: A0A0G2JWZ0 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1636 BioCyc
Ensembl Genes ENSRNOG00000058183 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082858.2 UniProtKB/TrEMBL
InterPro TMEM258/Ost5 UniProtKB/TrEMBL
NCBI Gene 680191 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 258 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Ost5 UniProtKB/TrEMBL
PhenoGen Tmem258l4 PhenoGen
RatGTEx ENSRNOG00000058183 RatGTEx
UniProt A0A0G2JWZ0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-17 Tmem258l4  transmembrane protein 258 like 4  Tmem258l1  transmembrane protein 258 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Tmem258l1  transmembrane protein 258 like 1  LOC680191  similar to UPF0197 protein C11orf10 homolog  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC680191  similar to UPF0197 protein C11orf10 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL