LOC120099454 (small nucleolar RNA SNORA44) - Rat Genome Database

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Gene: LOC120099454 (small nucleolar RNA SNORA44) Rattus norvegicus
Analyze
Symbol: LOC120099454
Name: small nucleolar RNA SNORA44
RGD ID: 41153418
Description:
Type: pseudo (Ensembl: snoRNA)
RefSeq Status: MODEL
Previously known as: AABR07040332.1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X95,102,724 - 95,102,835 (+)NCBIGRCr8
mRatBN7.2X90,841,390 - 90,841,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX90,841,390 - 90,841,501 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 EnsemblX90,841,390 - 90,841,501 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX98,033,341 - 98,033,452 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120099454
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000085780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX90,841,390 - 90,841,501 (+)Ensembl
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1735 BioCyc
Ensembl Genes ENSRNOG00000060982 Ensembl
NCBI Gene LOC120099454 ENTREZGENE
PhenoGen LOC120099454 PhenoGen
RatGTEx ENSRNOG00000060982 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099454  small nucleolar RNA SNORA44  AABR07040332.1    Data merged from RGD:15013744 737654 PROVISIONAL
2021-01-27 LOC120099454  small nucleolar RNA SNORA44      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07040332.1        Symbol and Name status set to provisional 45752 PROVISIONAL