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Gene: Smarca1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1) Rattus norvegicus
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Symbol: Smarca1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Description: Predicted to have several functions, including chromatin binding activity; nucleoside-triphosphatase activity; and transcription factor binding activity. Predicted to be involved in several processes, including chromatin organization; nervous system development; and positive regulation of transcription by RNA polymerase II. Predicted to localize to CERF complex; NURF complex; and nucleoplasm. Orthologous to human SMARCA1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; INTERACTS WITH 2-methoxyethanol; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC317575; probable global transcription activator SNF2L1; RGD1561046; similar to Smarca1 protein
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X134,634,651 - 134,719,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX134,647,703 - 134,719,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,177,345 - 134,249,029 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX125,946,308 - 126,012,001 (-)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smarca1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1561046
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.