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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prostatic Neoplasms | | ISO | RGD:1350342 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29610475 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prostatic Neoplasms | | ISO | RGD:1350342 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29610475 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. | Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1. |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Comprehensive gene review and curation | RGD comprehensive gene curation |
PMID:14609955 | PMID:15640247 | PMID:20850016 | PMID:22516202 | PMID:22705370 | PMID:27141965 |
Smarca1 (Rattus norvegicus - Norway rat) |
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SMARCA1 (Homo sapiens - human) |
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Smarca1 (Mus musculus - house mouse) |
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Smarca1 (Chinchilla lanigera - long-tailed chinchilla) |
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SMARCA1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SMARCA1 (Canis lupus familiaris - dog) |
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Smarca1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SMARCA1 (Sus scrofa - pig) |
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SMARCA1 (Chlorocebus sabaeus - green monkey) |
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Smarca1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Smarca1
284 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
D17Rat146 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 12 | 14 | 6 | 6 | 68 | 12 | 33 | 2 | |||||
Low | 3 | 27 | 30 | 28 | 11 | 28 | 6 | 6 | 6 | 21 | 8 | 9 | 6 |
Below cutoff | 4 | 13 | 7 | 8 | 7 | 2 | 4 | 2 | 2 |
RefSeq Transcripts | NM_001271190 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006257525 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006257526 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006257527 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008773524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017602088 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017602089 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005497994 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_597740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH473991 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JACYVU010000461 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000068478 ⟹ ENSRNOP00000060122 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000114801 ⟹ ENSRNOP00000092494 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000115795 ⟹ ENSRNOP00000077868 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001271190 ⟹ NP_001258119 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257525 ⟹ XP_006257587 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257526 ⟹ XP_006257588 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006257527 ⟹ XP_006257589 | ||||||||||||||||
RefSeq Status: | |||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XR_005497994 | ||||||||
RefSeq Status: | |||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001258119 | (Get FASTA) | NCBI Sequence Viewer |
XP_006257587 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006257588 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006257589 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM10901 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001258119 ⟸ NM_001271190 |
- UniProtKB: | D3ZIE5 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006257588 ⟸ XM_006257526 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | XP_006257587 ⟸ XM_006257525 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D3ZIE5 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006257589 ⟸ XM_006257527 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6AH59 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000060122 ⟸ ENSRNOT00000068478 |
RefSeq Acc Id: | ENSRNOP00000077868 ⟸ ENSRNOT00000115795 |
RefSeq Acc Id: | ENSRNOP00000092494 ⟸ ENSRNOT00000114801 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZIE5-F1-model_v2 | AlphaFold | D3ZIE5 | 1-1057 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13702007 | ||||||||
Promoter ID: | EPDNEW_R12531 | ||||||||
Type: | single initiation site | ||||||||
Name: | Smarca1_1 | ||||||||
Description: | SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily a, member 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1561046 | AgrOrtholog |
BioCyc Gene | G2FUF-1147 | BioCyc |
Ensembl Genes | ENSRNOG00000003762 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000060122 | ENTREZGENE |
ENSRNOP00000060122.4 | UniProtKB/TrEMBL | |
ENSRNOP00000077868.1 | UniProtKB/TrEMBL | |
ENSRNOP00000092494 | ENTREZGENE | |
ENSRNOP00000092494.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000068478 | ENTREZGENE |
ENSRNOT00000068478.4 | UniProtKB/TrEMBL | |
ENSRNOT00000114801 | ENTREZGENE | |
ENSRNOT00000114801.1 | UniProtKB/TrEMBL | |
ENSRNOT00000115795.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.1040.30 | UniProtKB/TrEMBL |
3.40.50.10810 | UniProtKB/TrEMBL | |
3.40.50.300 | UniProtKB/TrEMBL | |
Homeodomain-like | UniProtKB/TrEMBL | |
iswi atpase | UniProtKB/TrEMBL | |
InterPro | ATPase_nucl-remodel_HAND-dom | UniProtKB/TrEMBL |
DEAD-like_N | UniProtKB/TrEMBL | |
DNA/RNA_helicase_C | UniProtKB/TrEMBL | |
Homeodomain-like | UniProtKB/TrEMBL | |
ISWI_HAND-dom_sf | UniProtKB/TrEMBL | |
P-loop_NTPase | UniProtKB/TrEMBL | |
SANT_DNA-bd | UniProtKB/TrEMBL | |
SANT_eukarya | UniProtKB/TrEMBL | |
SLIDE | UniProtKB/TrEMBL | |
SMARCA1_N | UniProtKB/TrEMBL | |
SNF2-like_sf | UniProtKB/TrEMBL | |
SNF2_N | UniProtKB/TrEMBL | |
NCBI Gene | 317575 | ENTREZGENE |
PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | UniProtKB/TrEMBL |
ISW-1 | UniProtKB/TrEMBL | |
Pfam | HAND | UniProtKB/TrEMBL |
Helicase_C | UniProtKB/TrEMBL | |
SLIDE | UniProtKB/TrEMBL | |
SNF2_N | UniProtKB/TrEMBL | |
PhenoGen | Smarca1 | PhenoGen |
PROSITE | HELICASE_ATP_BIND_1 | UniProtKB/TrEMBL |
HELICASE_CTER | UniProtKB/TrEMBL | |
SANT | UniProtKB/TrEMBL | |
SMART | DEXDc | UniProtKB/TrEMBL |
HELICc | UniProtKB/TrEMBL | |
SANT | UniProtKB/TrEMBL | |
Superfamily-SCOP | Homeodomain_like | UniProtKB/TrEMBL |
Nucl_remodel_ATPase_ISWI_HAND | UniProtKB/TrEMBL | |
SSF52540 | UniProtKB/TrEMBL | |
UniProt | A0A8I5YCJ3_RAT | UniProtKB/TrEMBL |
A0A8I6AH59 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZIE5 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-04-30 | Smarca1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 | Smarca1_predicted | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-30 | Smarca1_predicted | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (predicted) | RGD1561046_predicted | similar to Smarca1 protein (predicted) | Symbol and Name updated | 1299863 | APPROVED |
2006-03-07 | RGD1561046_predicted | similar to Smarca1 protein (predicted) | LOC317575 | similar to Smarca1 protein | Symbol and Name status set to approved | 1299863 | APPROVED |
2006-02-09 | LOC317575 | similar to Smarca1 protein | Symbol and Name status set to provisional | 70820 | PROVISIONAL |