Septin6 (septin 6) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Septin6 (septin 6) Rattus norvegicus
Analyze
Symbol: Septin6
Name: septin 6
RGD ID: 1585082
Description: Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cytoskeleton-dependent cytokinesis and protein localization. Predicted to be located in several cellular components, including cleavage furrow; septin collar; and sperm annulus. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and presynapse. Orthologous to human SEPTIN6 (septin 6); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC691335; MGC189443; Sept6; septin-6; similar to septin 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,018,951 - 121,157,677 (-)NCBIGRCr8
mRatBN7.2X116,153,255 - 116,230,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,153,255 - 116,230,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX118,260,460 - 118,333,344 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X121,829,599 - 121,902,491 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X119,375,754 - 119,448,595 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X123,524,954 - 123,601,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,524,950 - 123,662,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X123,669,895 - 123,746,145 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X7,871,020 - 7,949,967 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX115,386,688 - 115,458,210 (-)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hydroquinone  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
propanal  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium fluoride  (EXP)
Soman  (EXP)
sulforaphane  (ISO)
testosterone  (EXP,ISO)
thioacetamide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axon terminus  (IEA,ISO)
cell division site  (IBA)
cleavage furrow  (IEA,ISO)
cytoplasm  (IEA)
cytoskeleton  (IEA)
microtubule cytoskeleton  (IBA)
presynapse  (IEA,ISO)
septin collar  (IEA,ISO)
septin complex  (IBA,IEA,ISO)
septin ring  (IBA,IEA,ISO)
sperm annulus  (IEA,ISO)
synaptic vesicle  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11064363   PMID:12477932   PMID:15632090   PMID:18809578   PMID:21544625   PMID:22232702   PMID:25588830   PMID:30315255  


Genomics

Comparative Map Data
Septin6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X121,018,951 - 121,157,677 (-)NCBIGRCr8
mRatBN7.2X116,153,255 - 116,230,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,153,255 - 116,230,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX118,260,460 - 118,333,344 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X121,829,599 - 121,902,491 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X119,375,754 - 119,448,595 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X123,524,954 - 123,601,214 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,524,950 - 123,662,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X123,669,895 - 123,746,145 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X7,871,020 - 7,949,967 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX115,386,688 - 115,458,210 (-)NCBICelera
Cytogenetic MapXq34NCBI
SEPTIN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,615,724 - 119,693,168 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX119,615,724 - 119,693,370 (-)EnsemblGRCh38hg38GRCh38
GRCh37X118,749,687 - 118,827,131 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X118,633,715 - 118,711,361 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X118,531,571 - 118,609,215NCBI
CeleraX119,204,389 - 119,281,983 (-)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX108,243,227 - 108,320,808 (-)NCBIHuRef
CHM1_1X118,661,311 - 118,738,951 (-)NCBICHM1_1
T2T-CHM13v2.0X117,993,452 - 118,071,836 (-)NCBIT2T-CHM13v2.0
Septin6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,174,925 - 36,253,711 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX36,174,979 - 36,255,447 (-)EnsemblGRCm39 Ensembl
GRCm38X36,911,272 - 36,990,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX36,911,326 - 36,991,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X34,451,267 - 34,529,690 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X33,343,690 - 33,420,902 (-)NCBIMGSCv36mm8
CeleraX23,634,917 - 23,713,330 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX21.32NCBI
Septin6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955534305,865 - 382,262 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955534306,691 - 381,799 (+)NCBIChiLan1.0ChiLan1.0
SEPTIN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X118,997,307 - 119,075,309 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X119,000,910 - 119,078,834 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X108,648,294 - 108,726,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X119,074,291 - 119,152,830 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX119,074,291 - 119,152,830 (-)Ensemblpanpan1.1panPan2
SEPTIN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X91,647,293 - 91,714,379 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX91,647,969 - 91,714,164 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX77,722,082 - 77,789,109 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X93,386,421 - 93,453,554 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX93,386,425 - 93,454,230 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X90,839,093 - 90,906,188 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X92,597,841 - 92,664,953 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X92,327,013 - 92,394,128 (-)NCBIUU_Cfam_GSD_1.0
Septin6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X90,682,172 - 90,754,460 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647910,233,005 - 10,305,392 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647910,233,035 - 10,305,327 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX98,031,890 - 98,161,607 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X98,033,212 - 98,106,082 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X113,558,623 - 113,631,613 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606532,369,118 - 32,449,079 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248953,582,538 - 3,650,010 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248953,583,198 - 3,649,478 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Septin6
205 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:377
Count of miRNA genes:209
Interacting mature miRNAs:242
Transcripts:ENSRNOT00000067942
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

Markers in Region
DXGot53  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X121,064,854 - 121,065,112 (+)Marker Load Pipeline
mRatBN7.2X116,199,160 - 116,199,418 (+)MAPPERmRatBN7.2
Rnor_6.0X123,570,848 - 123,571,105NCBIRnor6.0
Rnor_5.0X123,715,789 - 123,716,046UniSTSRnor5.0
RGSC_v3.4X7,907,347 - 7,907,604UniSTSRGSC3.4
RGSC_v3.4X7,907,346 - 7,907,604RGDRGSC3.4
RGSC_v3.1X7,912,903 - 7,913,160RGD
CeleraX115,429,051 - 115,429,308UniSTS
Cytogenetic MapXq12UniSTS
DBX  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,167,281 - 116,167,369 (+)MAPPERmRatBN7.2
mRatBN7.2X9,479,848 - 9,479,935 (+)MAPPERmRatBN7.2
Rnor_6.0X123,538,974 - 123,539,061NCBIRnor6.0
Rnor_6.0X10,400,680 - 10,400,766NCBIRnor6.0
Rnor_5.0X123,683,915 - 123,684,002UniSTSRnor5.0
Rnor_5.0X11,199,062 - 11,199,148UniSTSRnor5.0
RGSC_v3.4X21,495,386 - 21,495,472UniSTSRGSC3.4
RGSC_v3.4X7,939,396 - 7,939,483UniSTSRGSC3.4
CeleraX115,397,167 - 115,397,254UniSTS
CeleraX10,011,594 - 10,011,680UniSTS
Cytogenetic MapXq12UniSTS
RH144503  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X121,092,611 - 121,092,855 (+)Marker Load Pipeline
mRatBN7.2X116,226,921 - 116,227,165 (+)MAPPERmRatBN7.2
Rnor_6.0X123,597,710 - 123,597,953NCBIRnor6.0
Rnor_5.0X123,742,746 - 123,742,989UniSTSRnor5.0
CeleraX115,455,030 - 115,455,273UniSTS
Cytogenetic MapXq12UniSTS
AI072432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,156,950 - 116,157,137 (+)MAPPERmRatBN7.2
Rnor_6.0X123,528,646 - 123,528,832NCBIRnor6.0
Rnor_5.0X123,673,587 - 123,673,773UniSTSRnor5.0
RGSC_v3.4X7,949,626 - 7,949,812UniSTSRGSC3.4
CeleraX115,386,843 - 115,387,029UniSTS
Cytogenetic MapXq12UniSTS
UniSTS:488532  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,292,100 - 116,293,543 (+)MAPPERmRatBN7.2
Rnor_6.0X123,662,548 - 123,663,990NCBIRnor6.0
Rnor_5.0X123,806,258 - 123,807,700UniSTSRnor5.0
RGSC_v3.4X7,869,506 - 7,870,948UniSTSRGSC3.4
CeleraX115,519,980 - 115,521,422UniSTS
Cytogenetic MapXq12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001173429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC169051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067942   ⟹   ENSRNOP00000061494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,156,797 - 116,230,115 (-)Ensembl
Rnor_6.0 EnsemblX123,528,491 - 123,600,890 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092301   ⟹   ENSRNOP00000075754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,163,234 - 116,213,556 (-)Ensembl
Rnor_6.0 EnsemblX123,525,926 - 123,601,100 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092408   ⟹   ENSRNOP00000075880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,163,634 - 116,230,102 (-)Ensembl
Rnor_6.0 EnsemblX123,535,327 - 123,600,890 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092546   ⟹   ENSRNOP00000075809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,153,255 - 116,230,115 (-)Ensembl
Rnor_6.0 EnsemblX123,524,950 - 123,601,100 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092624   ⟹   ENSRNOP00000075771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,576,039 - 123,662,350 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092670   ⟹   ENSRNOP00000075833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,163,834 - 116,230,115 (-)Ensembl
Rnor_6.0 EnsemblX123,525,926 - 123,601,100 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109309   ⟹   ENSRNOP00000088464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,154,475 - 116,230,115 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119795   ⟹   ENSRNOP00000081808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,163,234 - 116,213,271 (-)Ensembl
RefSeq Acc Id: NM_001173429   ⟹   NP_001166900
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,022,492 - 121,095,792 (-)NCBI
mRatBN7.2X116,156,796 - 116,230,102 (-)NCBI
Rnor_6.0X123,528,491 - 123,600,890 (-)NCBI
Rnor_5.0X123,669,895 - 123,746,145 (-)NCBI
CeleraX115,386,688 - 115,458,210 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257463   ⟹   XP_006257525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,096,196 (-)NCBI
mRatBN7.2X116,154,448 - 116,230,328 (-)NCBI
Rnor_6.0X123,526,143 - 123,601,207 (-)NCBI
Rnor_5.0X123,669,895 - 123,746,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602157   ⟹   XP_017457646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,096,081 (-)NCBI
mRatBN7.2X116,154,448 - 116,230,334 (-)NCBI
Rnor_6.0X123,526,143 - 123,601,214 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602158   ⟹   XP_017457647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,022,492 - 121,096,080 (-)NCBI
mRatBN7.2X116,156,796 - 116,230,333 (-)NCBI
Rnor_6.0X123,528,488 - 123,601,214 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602159   ⟹   XP_017457648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,018,951 - 121,096,076 (-)NCBI
mRatBN7.2X116,153,255 - 116,230,333 (-)NCBI
Rnor_6.0X123,524,954 - 123,601,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602161   ⟹   XP_017457650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,096,078 (-)NCBI
mRatBN7.2X116,154,448 - 116,230,333 (-)NCBI
Rnor_6.0X123,526,143 - 123,601,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063280315   ⟹   XP_063136385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,157,677 (-)NCBI
RefSeq Acc Id: XM_063280316   ⟹   XP_063136386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,157,653 (-)NCBI
RefSeq Acc Id: XM_063280317   ⟹   XP_063136387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,022,492 - 121,096,196 (-)NCBI
RefSeq Acc Id: XM_063280318   ⟹   XP_063136388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,018,951 - 121,096,196 (-)NCBI
RefSeq Acc Id: XM_063280319   ⟹   XP_063136389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,096,196 (-)NCBI
RefSeq Acc Id: XM_063280320   ⟹   XP_063136390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X121,020,144 - 121,090,491 (-)NCBI
RefSeq Acc Id: NP_001166900   ⟸   NM_001173429
- UniProtKB: B5DFG5 (UniProtKB/TrEMBL),   F1LRN3 (UniProtKB/TrEMBL),   A0A9K3Y7T9 (UniProtKB/TrEMBL),   A0A0U1RRN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257525   ⟸   XM_006257463
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AA08 (UniProtKB/TrEMBL),   A6JMH0 (UniProtKB/TrEMBL),   A0A0U1RRN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457648   ⟸   XM_017602159
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457646   ⟸   XM_017602157
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457650   ⟸   XM_017602161
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457647   ⟸   XM_017602158
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075754   ⟸   ENSRNOT00000092301
Ensembl Acc Id: ENSRNOP00000075880   ⟸   ENSRNOT00000092408
Ensembl Acc Id: ENSRNOP00000075833   ⟸   ENSRNOT00000092670
Ensembl Acc Id: ENSRNOP00000075809   ⟸   ENSRNOT00000092546
Ensembl Acc Id: ENSRNOP00000075771   ⟸   ENSRNOT00000092624
Ensembl Acc Id: ENSRNOP00000061494   ⟸   ENSRNOT00000067942
Ensembl Acc Id: ENSRNOP00000081808   ⟸   ENSRNOT00000119795
Ensembl Acc Id: ENSRNOP00000088464   ⟸   ENSRNOT00000109309
RefSeq Acc Id: XP_063136388   ⟸   XM_063280318
- Peptide Label: isoform X7
- UniProtKB: A0A0U1RRT8 (UniProtKB/TrEMBL),   A6JMG9 (UniProtKB/TrEMBL),   A0A0U1RRN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136385   ⟸   XM_063280315
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AA08 (UniProtKB/TrEMBL),   A6JMH0 (UniProtKB/TrEMBL),   A0A0U1RRN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136386   ⟸   XM_063280316
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AA08 (UniProtKB/TrEMBL),   A6JMH0 (UniProtKB/TrEMBL),   A0A0U1RRN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136389   ⟸   XM_063280319
- Peptide Label: isoform X8
- UniProtKB: A0A9K3Y7T9 (UniProtKB/TrEMBL),   B5DFG5 (UniProtKB/TrEMBL),   F1LRN3 (UniProtKB/TrEMBL),   A0A0U1RRN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136390   ⟸   XM_063280320
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZSZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136387   ⟸   XM_063280317
- Peptide Label: isoform X6
- UniProtKB: A0A0U1RRN9 (UniProtKB/TrEMBL)
Protein Domains
Septin-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0U1RRT8-F1-model_v2 AlphaFold A0A0U1RRT8 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701985
Promoter ID:EPDNEW_R12509
Type:initiation region
Name:Sept6_1
Description:septin 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X123,600,924 - 123,600,984EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585082 AgrOrtholog
BioCyc Gene G2FUF-1301 BioCyc
Ensembl Genes ENSRNOG00000043182 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067942 ENTREZGENE
  ENSRNOT00000067942.4 UniProtKB/TrEMBL
  ENSRNOT00000092301.2 UniProtKB/TrEMBL
  ENSRNOT00000092408.2 UniProtKB/TrEMBL
  ENSRNOT00000092546 ENTREZGENE
  ENSRNOT00000092546.2 UniProtKB/TrEMBL
  ENSRNOT00000092670 ENTREZGENE
  ENSRNOT00000092670.2 UniProtKB/TrEMBL
  ENSRNOT00000109309 ENTREZGENE
  ENSRNOT00000109309.1 UniProtKB/TrEMBL
  ENSRNOT00000119795.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_SEPTIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
KEGG Report rno:691335 UniProtKB/TrEMBL
NCBI Gene 691335 ENTREZGENE
PANTHER SEPTIN UniProtKB/TrEMBL
Pfam Septin UniProtKB/TrEMBL
PhenoGen Septin6 PhenoGen
PIRSF Septin UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000043182 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0U1RRN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RRT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RRW2_RAT UniProtKB/TrEMBL
  A0A0U1RS01_RAT UniProtKB/TrEMBL
  A0A8I5ZSZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AA08 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y7T9 ENTREZGENE, UniProtKB/TrEMBL
  A6JMG9 ENTREZGENE, UniProtKB/TrEMBL
  A6JMH0 ENTREZGENE, UniProtKB/TrEMBL
  B5DFG5 ENTREZGENE, UniProtKB/TrEMBL
  F1LRN3 ENTREZGENE
UniProt Secondary F1LRN3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Septin6  septin 6  Sept6  septin 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Sept6  septin 6  LOC691335  similar to septin 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC691335  similar to septin 6  LOC682750  similar to Septin-6  Data merged from RGD:1595290 1643240 APPROVED
2006-11-20 LOC682750  similar to Septin-6      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691335  similar to septin 6      Symbol and Name status set to provisional 70820 PROVISIONAL