DXRat29 Marker Search Result - Rat Genome Database

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Marker: DXRat29

Symbol: DXRat29
Previously known as: R0014-D04; oxsts7592; R014-D04; 
RGD ID: 35156
Expected Size: 166 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X52,014,107 - 52,014,270 (+)MAPPERmRatBN7.2
Rnor_6.0X56,098,146 - 56,098,308NCBIRnor6.0
Rnor_5.0X56,889,442 - 56,889,604UniSTSRnor5.0
RGSC_v3.4X74,354,271 - 74,354,434RGDRGSC3.4
RGSC_v3.4X74,354,272 - 74,354,434UniSTSRGSC3.4
RGSC_v3.1X74,427,563 - 74,427,726RGD
CeleraX52,536,855 - 52,537,017UniSTS
FHH x ACI MapX22.26RGD
FHH x ACI MapX22.26UniSTS
Cytogenetic MapXq22UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Il1rapl1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGGTCTGCATTTCATTTGGA
Reverse Primer GGGAGATGAATGGATGGATC
 
Template 
TGGTTCCCACATAGACATAAAATATAATGCATTCTGTTAAAAATGGGTCTGCATTTCATTTGGA
TCCATTTACATATTGTATTTTCTATGTGTATTTCTTTTAATATTGAACTCTCACATGTTTCTCT
TTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTCG
ATCCATCCATTCATCTCCCTATGGAAACTGTTTTACACACACACAGACACACACACACACACAC
ACACACACACACACACAAAACATGGTCTCATATAAGTCTTGTGACTTTAATGGGTGGGTACCGA
GCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCC
ACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTC
ACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATT
AATGAATCGGCCC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
727891Il1rapl1interleukin 1 receptor accessory protein-like 1X5137196952876726Rat

Nucleotide Sequences
GenBank Nucleotide CH473966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 317553 UniSTS
UniSTS 119628 UniSTS