Ppid-ps20 (peptidylprolyl isomerase D, pseudogene 20) - Rat Genome Database

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Gene: Ppid-ps20 (peptidylprolyl isomerase D, pseudogene 20) Rattus norvegicus
Analyze
Symbol: Ppid-ps20
Name: peptidylprolyl isomerase D, pseudogene 20
RGD ID: 1598351
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC295142; similar to peptidylprolyl isomerase D
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X115,336,309 - 115,337,722 (+)NCBIGRCr8
mRatBN7.2X110,524,551 - 110,525,661 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X36,656,982 - 36,658,103 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X36,981,039 - 36,982,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X31,360,676 - 31,361,786 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX109,850,979 - 109,852,100 (+)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Ppid-ps20
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1460 BioCyc
NCBI Gene 295142 ENTREZGENE
PhenoGen Ppid-ps20 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ppid-ps20  peptidylprolyl isomerase D, pseudogene 20  LOC295142  similar to peptidylprolyl isomerase D  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC295142  similar to peptidylprolyl isomerase D      Symbol and Name status set to provisional 70820 PROVISIONAL