Zfp711 (zinc finger protein 711) - Rat Genome Database
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Gene: Zfp711 (zinc finger protein 711) Rattus norvegicus
Analyze
Symbol: Zfp711
Name: zinc finger protein 711
RGD ID: 1562768
Description: Predicted to have chromatin insulator sequence binding activity and sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated and regulation of transcription by RNA polymerase II. Predicted to localize to chromosome and nucleus. Orthologous to human ZNF711 (zinc finger protein 711); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; testosterone.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC302327; RGD1562768; similar to ZNF6 protein; Znf711
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X77,646,300 - 77,679,398 (+)NCBI
Rnor_6.0 EnsemblX84,064,427 - 84,096,617 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X84,062,363 - 84,095,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X84,011,437 - 84,045,090 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X101,187,139 - 101,215,168 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX78,946,332 - 78,979,432 (+)NCBICelera
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA)
nucleus  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:20346720   PMID:23376485  


Genomics

Comparative Map Data
Zfp711
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X77,646,300 - 77,679,398 (+)NCBI
Rnor_6.0 EnsemblX84,064,427 - 84,096,617 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X84,062,363 - 84,095,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X84,011,437 - 84,045,090 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X101,187,139 - 101,215,168 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX78,946,332 - 78,979,432 (+)NCBICelera
Cytogenetic MapXq31NCBI
ZNF711
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX85,244,032 - 85,273,362 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 EnsemblX85,243,991 - 85,273,362 (+)EnsemblGRCh38hg38GRCh38
GRCh38X85,243,820 - 85,273,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X84,498,997 - 84,528,363 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X84,498,826 - 84,528,368 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X84,385,653 - 84,415,024 (+)NCBINCBI36hg18NCBI36
Build 34X84,305,235 - 84,333,072NCBI
CeleraX84,738,361 - 84,767,732 (+)NCBI
Cytogenetic MapXq21.1NCBI
HuRefX78,072,499 - 78,101,368 (+)NCBIHuRef
CHM1_1X84,392,701 - 84,421,999 (+)NCBICHM1_1
Zfp711
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X111,510,223 - 111,544,767 (+)NCBIGRCm39mm39
GRCm38X112,600,526 - 112,635,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX112,600,526 - 112,635,070 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X109,714,135 - 109,748,671 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X108,717,470 - 108,743,017 (+)NCBImm8
CeleraX99,225,536 - 99,256,329 (+)NCBICelera
Cytogenetic MapXE1NCBI
Znf711
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555294,111,128 - 4,136,415 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555294,108,202 - 4,134,696 (+)NCBIChiLan1.0ChiLan1.0
ZNF711
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X84,424,414 - 84,453,640 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX84,424,414 - 84,453,640 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X74,314,161 - 74,343,246 (+)NCBIMhudiblu_PPA_v0panPan3
ZNF711
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX66,203,463 - 66,227,641 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X66,203,972 - 66,229,171 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Znf711
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365475,999,792 - 6,026,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF711
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX68,475,601 - 68,499,321 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X68,475,512 - 68,499,329 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X78,275,335 - 78,322,084 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF711
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X74,093,028 - 74,121,805 (+)NCBI
ChlSab1.1 EnsemblX74,094,789 - 74,122,024 (+)Ensembl
Znf711
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248523,137,206 - 3,163,124 (-)NCBI

Position Markers
WI-14596  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X84,095,901 - 84,096,029NCBIRnor6.0
Rnor_5.0X84,044,948 - 84,045,076UniSTSRnor5.0
RGSC_v3.4X101,216,542 - 101,216,670UniSTSRGSC3.4
CeleraX78,979,445 - 78,979,573UniSTS
Cytogenetic MapXq32UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X15688119127888215Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X44320616158345622Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX44557974120045269Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X70352120127888215Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X82930791127930791Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:77
Interacting mature miRNAs:80
Transcripts:ENSRNOT00000046364
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 46 10
Low 1 32 11 11 9 11 1 1 28 27 31 11 1
Below cutoff 2 10 41 25 10 25 6 6 8 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000046364   ⟹   ENSRNOP00000041511
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX84,064,427 - 84,096,617 (+)Ensembl
RefSeq Acc Id: XM_002727619   ⟹   XP_002727665
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX78,946,332 - 78,979,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_002730265   ⟹   XP_002730311
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X77,646,300 - 77,679,398 (+)NCBI
Rnor_6.0X84,062,363 - 84,095,888 (+)NCBI
Rnor_5.0X84,011,437 - 84,045,090 (+)NCBI
RGSC_v3.4X101,187,139 - 101,215,168 (+)RGD
Sequence:
RefSeq Acc Id: XM_008758489   ⟹   XP_008756711
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX78,946,332 - 78,979,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773361   ⟹   XP_008771583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X84,062,363 - 84,095,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017588279   ⟹   XP_017443768
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX78,946,332 - 78,979,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017588280   ⟹   XP_017443769
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX78,947,387 - 78,979,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017588281   ⟹   XP_017443770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX78,947,388 - 78,979,432 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602345   ⟹   XP_017457834
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X77,646,300 - 77,679,398 (+)NCBI
Rnor_6.0X84,062,363 - 84,095,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602346   ⟹   XP_017457835
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X84,063,418 - 84,095,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602347   ⟹   XP_017457836
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X84,065,370 - 84,095,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602348   ⟹   XP_017457837
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X84,063,419 - 84,095,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100220   ⟹   XP_038956148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X77,646,300 - 77,679,398 (+)NCBI
RefSeq Acc Id: XM_039100221   ⟹   XP_038956149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X77,646,303 - 77,679,398 (+)NCBI
Protein Sequences
Protein RefSeqs XP_002730311 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457834 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956148 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956149 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM07077 (Get FASTA)   NCBI Sequence Viewer  
  EDM07078 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_002727665   ⟸   XM_002727619
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_002730311   ⟸   XM_002730265
- Peptide Label: isoform X1
- UniProtKB: D3ZHB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008756711   ⟸   XM_008758489
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008771583   ⟸   XM_008773361
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017443768   ⟸   XM_017588279
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017443769   ⟸   XM_017588280
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017443770   ⟸   XM_017588281
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017457834   ⟸   XM_017602345
- Peptide Label: isoform X1
- UniProtKB: D3ZHB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457835   ⟸   XM_017602346
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017457837   ⟸   XM_017602348
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017457836   ⟸   XM_017602347
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000041511   ⟸   ENSRNOT00000046364
RefSeq Acc Id: XP_038956148   ⟸   XM_039100220
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956149   ⟸   XM_039100221
- Peptide Label: isoform X2
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562768 AgrOrtholog
Ensembl Genes ENSRNOG00000022391 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000041511 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046364 UniProtKB/TrEMBL
InterPro Transcrp_activ_Zfx/Zfy-dom UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:302327 UniProtKB/TrEMBL
NCBI Gene 302327 ENTREZGENE
Pfam zf-C2H2 UniProtKB/TrEMBL
  Zfx_Zfy_act UniProtKB/TrEMBL
PhenoGen Zfp711 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt D3ZHB2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-19 Zfp711  zinc finger protein 711  Znf711  zinc finger protein 711  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-07 Znf711  zinc finger protein 711  RGD1562768  similar to ZNF6 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562768  similar to ZNF6 protein   RGD1562768_predicted  similar to ZNF6 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562768_predicted  similar to ZNF6 protein (predicted)  LOC302327  similar to ZNF6 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302327  similar to ZNF6 protein      Symbol and Name status set to provisional 70820 PROVISIONAL