DXMgh9 Marker Search Result - Rat Genome Database

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Marker: DXMgh9

Symbol: DXMgh9
Previously known as: oxsts9246; R3831; 
RGD ID: 34192
Expected Size: 145 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,612,192 - 65,612,337 (+)MAPPERmRatBN7.2
Rnor_6.0X70,352,120 - 70,352,264NCBIRnor6.0
Rnor_5.0X71,224,072 - 71,224,216UniSTSRnor5.0
RGSC_v3.4X88,514,169 - 88,514,313UniSTSRGSC3.4
RGSC_v3.4X88,514,168 - 88,514,313RGDRGSC3.4
RGSC_v3.1X88,587,601 - 88,587,746RGD
CeleraX65,971,600 - 65,971,744UniSTS
Cytogenetic MapX RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   WN/N   M520/N   ACI/N   BN-Lx/Cub   GH/Omr   COP/OlaHsd  
QTLs:   Cia19   Bp56  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Genetic dissection of a rat model for rheumatoid arthritis: significant gender influences on autosomal modifier loci Furuya T, etal., Hum Mol Genet 2000 Sep 22;9(15):2241-50
3. UniSTS Pipeline RGD automated pipelines
4. Electronic Submission of SSLP Data Sets Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence
 
Forward Primer GTTGTCTGGTGCCAAAAGGT
Reverse Primer AAGGATGATCTTAAGCTCCTGG
 
Strain Variation
Strain, Expected Size(s)
ACI/N132
AVN/Orl153
BBDP/Rhw132
BBDR/Rhw153
BC/CpbU147
BDIX/Han153
BDVII/Cub132
BN-Lx/Cub158
BN/SsNHsd158
BP/Cub132
BUF/Pit160
COP/OlaHsd132
DA/PitN152
DON/Melb155
F344/Pit155
FHH/Eur132
GH/Omr153
IS/Kyo147
LE/Mol153
LEW/Pit132
LH/Mav153
M520/N153
WN/N153


Region

Nucleotide Sequences
GenBank Nucleotide AC141377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
Database Acc Id Source(s)
NCBI Gene 326439 UniSTS
  326547 UniSTS
UniSTS 122572 UniSTS