Maged1 (MAGE family member D1) - Rat Genome Database

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Gene: Maged1 (MAGE family member D1) Rattus norvegicus
Analyze
Symbol: Maged1
Name: MAGE family member D1
RGD ID: 70898
Description: Predicted to enable identical protein binding activity and transcription coactivator activity. Predicted to be involved in several processes, including positive regulation of MAP kinase activity; positive regulation of branching involved in ureteric bud morphogenesis; and regulation of gene expression. Predicted to act upstream of or within negative regulation of protein localization to nucleus; positive regulation of apoptotic signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to be located in chromatin. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Orthologous to human MAGED1 (MAGE family member D1); PARTICIPATES IN neurotrophic factor signaling pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MAGE-D1 antigen; melanoma antigen, family D, 1; melanoma-associated antigen D1; MGC93306; neurotrophin receptor-interacting MAGE homolog; Nrage; sertoli cell necdin-related gene protein 1; SNERG-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X59,422,715 - 59,429,381 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX59,422,717 - 59,429,364 (-)Ensembl
Rnor_6.0X63,803,194 - 63,809,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,803,189 - 63,809,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X64,712,956 - 64,719,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X82,054,042 - 82,060,563 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X82,127,335 - 82,133,978 (-)NCBI
CeleraX59,851,634 - 59,858,155 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:11014239   PMID:11084035   PMID:12598531   PMID:15878242   PMID:15911347   PMID:15930293   PMID:17488777   PMID:19268530   PMID:20300063   PMID:20595047   PMID:23717400   PMID:25416956  
PMID:30361391   PMID:34755671  


Genomics

Comparative Map Data
Maged1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X59,422,715 - 59,429,381 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX59,422,717 - 59,429,364 (-)Ensembl
Rnor_6.0X63,803,194 - 63,809,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX63,803,189 - 63,809,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X64,712,956 - 64,719,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X82,054,042 - 82,060,563 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X82,127,335 - 82,133,978 (-)NCBI
CeleraX59,851,634 - 59,858,155 (-)NCBICelera
Cytogenetic MapXq22NCBI
MAGED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X51,803,076 - 51,902,354 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX51,803,007 - 51,902,354 (+)EnsemblGRCh38hg38GRCh38
GRCh37X51,546,172 - 51,645,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X51,562,895 - 51,662,190 (+)NCBINCBI36hg18NCBI36
Build 34X51,469,733 - 51,478,484NCBI
CeleraX56,085,672 - 56,184,754 (-)NCBI
Cytogenetic MapXp11.22NCBI
HuRefX48,983,076 - 49,081,965 (+)NCBIHuRef
CHM1_1X51,620,064 - 51,719,373 (+)NCBICHM1_1
Maged1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X93,579,080 - 93,585,631 (-)NCBIGRCm39mm39
GRCm39 EnsemblX93,579,080 - 93,585,749 (-)Ensembl
GRCm38X94,535,474 - 94,542,025 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX94,535,474 - 94,542,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X91,780,813 - 91,787,413 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X90,788,193 - 90,794,793 (-)NCBImm8
CeleraX81,462,775 - 81,469,541 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.56NCBI
Maged1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555432,975,259 - 3,052,504 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555432,939,960 - 3,052,442 (+)NCBIChiLan1.0ChiLan1.0
MAGED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X51,893,306 - 51,992,850 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX51,984,080 - 51,992,850 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X43,999,576 - 44,098,848 (+)NCBIMhudiblu_PPA_v0panPan3
MAGED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X44,395,091 - 44,458,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX44,395,015 - 44,458,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX36,039,038 - 36,102,501 (+)NCBI
ROS_Cfam_1.0X44,521,320 - 44,584,780 (+)NCBI
ROS_Cfam_1.0 EnsemblX44,507,586 - 44,584,775 (+)Ensembl
UMICH_Zoey_3.1X44,356,467 - 44,419,928 (+)NCBI
UNSW_CanFamBas_1.0X44,514,463 - 44,577,911 (+)NCBI
UU_Cfam_GSD_1.0X44,750,886 - 44,814,350 (+)NCBI
Maged1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X37,067,532 - 37,166,211 (-)NCBI
SpeTri2.0NW_004936909493,998 - 592,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX45,282,056 - 45,329,278 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X45,258,761 - 45,329,282 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X50,632,319 - 50,702,990 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAGED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X48,523,139 - 48,629,837 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX48,621,533 - 48,630,306 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660862,252,727 - 2,359,760 (+)NCBIVero_WHO_p1.0
Maged1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462498153,502 - 229,889 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
Maged1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,422,747 - 59,422,920 (+)MAPPERmRatBN7.2
Rnor_6.0X63,803,227 - 63,803,399NCBIRnor6.0
Rnor_5.0X64,712,989 - 64,713,161UniSTSRnor5.0
RGSC_v3.4X82,054,075 - 82,054,247UniSTSRGSC3.4
CeleraX59,851,667 - 59,851,839UniSTS
Cytogenetic MapXq31UniSTS
AA998497  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,422,751 - 59,423,151 (+)MAPPERmRatBN7.2
Rnor_6.0X63,803,231 - 63,803,630NCBIRnor6.0
Rnor_5.0X64,712,993 - 64,713,392UniSTSRnor5.0
RGSC_v3.4X82,054,079 - 82,054,478UniSTSRGSC3.4
CeleraX59,851,671 - 59,852,070UniSTS
Cytogenetic MapXq31UniSTS
UniSTS:546850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X59,426,181 - 59,427,714 (+)MAPPERmRatBN7.2
Rnor_6.0X63,806,661 - 63,808,193NCBIRnor6.0
Rnor_5.0X64,716,423 - 64,717,955UniSTSRnor5.0
CeleraX59,855,101 - 59,856,633UniSTS
Cytogenetic MapXq31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:132
Interacting mature miRNAs:143
Transcripts:ENSRNOT00000009870
Prediction methods:Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1
Medium 3 43 55 41 17 41 4 7 74 35 40 11 4
Low 2 2 4 4 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000009870   ⟹   ENSRNOP00000009870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX59,422,717 - 59,429,364 (-)Ensembl
Rnor_6.0 EnsemblX63,803,189 - 63,809,861 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076311
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,803,968 - 63,806,465 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX59,424,983 - 59,426,020 (-)Ensembl
Rnor_6.0 EnsemblX63,805,462 - 63,806,499 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076938   ⟹   ENSRNOP00000068192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,803,189 - 63,803,915 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084632   ⟹   ENSRNOP00000075156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX63,803,189 - 63,807,810 (-)Ensembl
RefSeq Acc Id: NM_053409   ⟹   NP_445861
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X59,422,715 - 59,429,237 (-)NCBI
Rnor_6.0X63,803,194 - 63,809,715 (-)NCBI
Rnor_5.0X64,712,956 - 64,719,477 (-)NCBI
RGSC_v3.4X82,054,042 - 82,060,563 (-)RGD
CeleraX59,851,634 - 59,858,155 (-)RGD
Sequence:
RefSeq Acc Id: XM_039100114   ⟹   XP_038956042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X59,422,715 - 59,429,381 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_445861   ⟸   NM_053409
- UniProtKB: Q9ES73 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075156   ⟸   ENSRNOT00000084632
RefSeq Acc Id: ENSRNOP00000009870   ⟸   ENSRNOT00000009870
RefSeq Acc Id: ENSRNOP00000068192   ⟸   ENSRNOT00000076938
RefSeq Acc Id: XP_038956042   ⟸   XM_039100114
- Peptide Label: isoform X1
Protein Domains
MAGE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES73-F1-model_v2 AlphaFold Q9ES73 1-775 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701845
Promoter ID:EPDNEW_R12366
Type:single initiation site
Name:Maged1_1
Description:MAGE family member D1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X63,806,442 - 63,806,502EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:70898 AgrOrtholog
BioCyc Gene G2FUF-2224 BioCyc
Ensembl Genes ENSRNOG00000006756 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000009870 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000068192 UniProtKB/TrEMBL
  ENSRNOP00000075156 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009870 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000076938 UniProtKB/TrEMBL
  ENSRNOT00000084632 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134252 IMAGE-MGC_LOAD
InterPro MAGE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAGED1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84469 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93306 IMAGE-MGC_LOAD
NCBI Gene 84469 ENTREZGENE
PANTHER PTHR11736 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11736:SF28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MAGE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Maged1 PhenoGen
PROSITE MAGE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MAGE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MJM9_RAT UniProtKB/TrEMBL
  A0A0G2K9W5_RAT UniProtKB/TrEMBL
  MAGD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q66HP3 UniProtKB/Swiss-Prot
  Q9JHZ6 UniProtKB/Swiss-Prot
  Q9QX92 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Maged1  MAGE family member D1  Maged1  melanoma antigen, family D, 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Maged1  melanoma antigen, family D, 1      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_process induces cytosolic accumulation of cytochrome c, activation of Caspases-3, -9 and -7, and caspase-dependent cell death 729110