Il1rapl1 (interleukin 1 receptor accessory protein-like 1) - Rat Genome Database

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Gene: Il1rapl1 (interleukin 1 receptor accessory protein-like 1) Rattus norvegicus
Analyze
Symbol: Il1rapl1
Name: interleukin 1 receptor accessory protein-like 1
RGD ID: 727891
Description: Predicted to enable signaling receptor binding activity. Involved in negative regulation of exocytosis and regulation of neuron projection development. Is active in glutamatergic synapse. Is integral component of postsynaptic density membrane. Human ortholog(s) of this gene implicated in intellectual disability and non-syndromic X-linked intellectual disability 21. Orthologous to human IL1RAPL1 (interleukin 1 receptor accessory protein like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; androgen antagonist.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: IL-1-RAPL-1; IL-1RAPL-1; Il1rapl; IL1RAPL-1; interleukin-1 receptor accessory protein-like 1; X-linked interleukin-1 receptor accessory protein-like 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X51,371,969 - 52,876,726 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX51,378,215 - 52,876,772 (-)Ensembl
Rnor_6.0X55,439,388 - 57,004,865 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX55,439,578 - 56,765,893 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X56,557,676 - 57,548,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X55,629,811 - 55,687,317 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X73,692,262 - 74,993,367 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X73,765,553 - 74,546,358 (-)NCBI
CeleraX51,905,428 - 53,154,707 (-)NCBICelera
Cytogenetic MapXq21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:12783849   PMID:21926414   PMID:21940441   PMID:25908590  


Genomics

Comparative Map Data
Il1rapl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X51,371,969 - 52,876,726 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX51,378,215 - 52,876,772 (-)Ensembl
Rnor_6.0X55,439,388 - 57,004,865 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX55,439,578 - 56,765,893 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X56,557,676 - 57,548,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X55,629,811 - 55,687,317 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X73,692,262 - 74,993,367 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X73,765,553 - 74,546,358 (-)NCBI
CeleraX51,905,428 - 53,154,707 (-)NCBICelera
Cytogenetic MapXq21NCBI
IL1RAPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X28,587,446 - 29,956,718 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX28,587,446 - 29,956,718 (+)EnsemblGRCh38hg38GRCh38
GRCh37X28,605,563 - 29,974,835 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X28,515,480 - 29,884,761 (+)NCBINCBI36hg18NCBI36
Build 34X28,365,215 - 29,734,493NCBI
CeleraX32,732,824 - 34,100,946 (+)NCBI
Cytogenetic MapXp21.3-p21.2NCBI
HuRefX26,346,333 - 27,710,305 (+)NCBIHuRef
CHM1_1X28,636,125 - 30,004,681 (+)NCBICHM1_1
T2T-CHM13v2.0X28,179,409 - 29,548,899 (+)NCBI
Il1rapl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X85,784,543 - 87,159,554 (-)NCBIGRCm39mm39
GRCm39 EnsemblX85,784,476 - 87,159,251 (-)Ensembl
GRCm38X86,740,937 - 88,115,948 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX86,740,870 - 88,115,645 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X83,992,581 - 85,360,962 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X82,999,961 - 83,673,259 (-)NCBImm8
CeleraX55,555,320 - 55,782,072 (-)NCBICelera
Cytogenetic MapXC1NCBI
IL1RAPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X28,743,801 - 30,110,177 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX28,950,521 - 30,109,286 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X21,180,693 - 22,548,122 (+)NCBIMhudiblu_PPA_v0panPan3
IL1RAPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X23,747,689 - 25,105,606 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX23,943,871 - 25,099,377 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX28,716,786 - 30,072,066 (+)NCBI
ROS_Cfam_1.0X23,768,977 - 25,120,119 (+)NCBI
ROS_Cfam_1.0 EnsemblX23,963,965 - 25,119,603 (+)Ensembl
UMICH_Zoey_3.1X23,811,147 - 25,168,166 (+)NCBI
UNSW_CanFamBas_1.0X23,817,557 - 25,165,880 (+)NCBI
UU_Cfam_GSD_1.0X23,913,009 - 25,261,426 (+)NCBI
Il1rapl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X16,779,973 - 18,009,042 (+)NCBI
SpeTri2.0NW_0049365535,063,042 - 5,824,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL1RAPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX24,645,529 - 25,805,945 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X24,408,092 - 25,811,129 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X28,021,764 - 28,070,970 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL1RAPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X27,014,769 - 28,388,176 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605628,985,163 - 30,376,870 (+)NCBIVero_WHO_p1.0
Il1rapl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624787268,829 - 1,291,144 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624787266,027 - 1,489,032 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
DXRat29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X52,014,107 - 52,014,270 (+)MAPPERmRatBN7.2
Rnor_6.0X56,098,146 - 56,098,308NCBIRnor6.0
Rnor_5.0X56,889,442 - 56,889,604UniSTSRnor5.0
RGSC_v3.4X74,354,271 - 74,354,434RGDRGSC3.4
RGSC_v3.4X74,354,272 - 74,354,434UniSTSRGSC3.4
RGSC_v3.1X74,427,563 - 74,427,726RGD
CeleraX52,536,855 - 52,537,017UniSTS
FHH x ACI MapX22.26RGD
FHH x ACI MapX22.26UniSTS
Cytogenetic MapXq22UniSTS
DXGot60  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X51,966,031 - 51,966,177 (+)MAPPERmRatBN7.2
Rnor_6.0X56,049,703 - 56,049,848NCBIRnor6.0
Rnor_5.0X56,840,999 - 56,841,144UniSTSRnor5.0
RGSC_v3.4X74,306,188 - 74,306,334RGDRGSC3.4
RGSC_v3.4X74,306,189 - 74,306,334UniSTSRGSC3.4
RGSC_v3.1X74,379,481 - 74,379,626RGD
CeleraX52,488,868 - 52,489,013UniSTS
RH 3.4 MapX657.6UniSTS
RH 3.4 MapX657.6RGD
RH 2.0 Map21526.4RGD
Cytogenetic MapXq22UniSTS
DXGot176  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X51,721,120 - 51,721,287 (+)MAPPERmRatBN7.2
Rnor_6.0X55,787,223 - 55,787,389NCBIRnor6.0
Rnor_5.0X56,578,182 - 56,578,348UniSTSRnor5.0
CeleraX52,244,818 - 52,244,984UniSTS
Cytogenetic MapXq22UniSTS
RH143953  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X52,588,405 - 52,588,599 (+)MAPPERmRatBN7.2
Rnor_6.0X56,716,092 - 56,716,285NCBIRnor6.0
Rnor_5.0X57,498,436 - 57,498,629UniSTSRnor5.0
RGSC_v3.4X74,943,960 - 74,944,153UniSTSRGSC3.4
CeleraX53,105,474 - 53,105,667UniSTS
Cytogenetic MapXq22UniSTS
BF390962  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X51,447,653 - 51,447,816 (+)MAPPERmRatBN7.2
Rnor_6.0X55,508,965 - 55,509,127NCBIRnor6.0
Rnor_5.0X55,699,198 - 55,699,360UniSTSRnor5.0
RGSC_v3.4X73,765,664 - 73,765,826UniSTSRGSC3.4
CeleraX51,973,377 - 51,973,539UniSTS
RH 3.4 Map5163.62UniSTS
Cytogenetic MapXq22UniSTS
IL1RAPL1_153  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X51,378,149 - 51,378,920 (+)MAPPERmRatBN7.2
Rnor_6.0X55,439,513 - 55,440,283NCBIRnor6.0
Rnor_5.0X55,629,746 - 55,630,516UniSTSRnor5.0
RGSC_v3.4X73,692,197 - 73,692,967UniSTSRGSC3.4
CeleraX51,905,363 - 51,906,133UniSTS
Cytogenetic MapXq22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:43
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000068350
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8
Low 7 13 56 1
Below cutoff 1 8 13 5 6 5 5 5 6 12 29 8 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000076283   ⟹   ENSRNOP00000068289
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX51,378,215 - 52,876,772 (-)Ensembl
Rnor_6.0 EnsemblX55,439,578 - 56,765,893 (-)Ensembl
RefSeq Acc Id: NM_177935   ⟹   NP_808796
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X51,378,215 - 52,637,650 (-)NCBI
Rnor_6.0X55,439,578 - 56,765,893 (-)NCBI
Rnor_5.0X55,629,811 - 55,687,317 (-)NCBI
Rnor_5.0X56,557,676 - 57,548,519 (-)NCBI
RGSC_v3.4X73,692,262 - 74,993,367 (-)RGD
CeleraX51,905,428 - 53,154,707 (-)RGD
Sequence:
RefSeq Acc Id: XM_017602087   ⟹   XP_017457576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X51,371,969 - 52,876,726 (-)NCBI
Rnor_6.0X55,439,388 - 57,004,865 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_808796 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457576 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAO62634 (Get FASTA)   NCBI Sequence Viewer  
  EDL96039 (Get FASTA)   NCBI Sequence Viewer  
  P59824 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_808796   ⟸   NM_177935
- Peptide Label: precursor
- UniProtKB: P59824 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017457576   ⟸   XM_017602087
- Peptide Label: isoform X1
- UniProtKB: A0A096MJW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068289   ⟸   ENSRNOT00000076283
Protein Domains
Ig-like   Ig-like C2-type   TIR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59824-F1-model_v2 AlphaFold P59824 1-696 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727891 AgrOrtholog
BioCyc Gene G2FUF-2331 BioCyc
Ensembl Genes ENSRNOG00000029663 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000068289 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076283 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:317553 UniProtKB/Swiss-Prot
NCBI Gene 317553 ENTREZGENE
PANTHER PTHR11890 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Il1rapl1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MJW6 ENTREZGENE, UniProtKB/TrEMBL
  IRPL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-11 Il1rapl1  glucose-6-phosphatase catalytic subunit 3  Il1rapl  interleukin 1 receptor accessory protein-like 1  Symbol updated to reflect Human and Mouse nomenclature 625702 APPROVED