Trpc5 (transient receptor potential cation channel, subfamily C, member 5) - Rat Genome Database

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Gene: Trpc5 (transient receptor potential cation channel, subfamily C, member 5) Rattus norvegicus
Analyze
Symbol: Trpc5
Name: transient receptor potential cation channel, subfamily C, member 5
RGD ID: 619787
Description: Enables ATPase binding activity; clathrin binding activity; and cytoskeletal protein binding activity. Involved in several processes, including positive regulation of peptidyl-threonine phosphorylation; regulation of membrane hyperpolarization; and regulation of neurogenesis. Located in dendrite; growth cone; and neuronal cell body. Orthologous to human TRPC5 (transient receptor potential cation channel subfamily C member 5); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: short transient receptor potential channel 5; transient receptor protein 5; Trrp5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X107,946,163 - 108,230,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,939,131 - 108,230,991 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX110,094,300 - 110,229,890 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X113,594,020 - 113,729,628 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X111,146,259 - 111,281,824 (-)NCBIRnor_WKY
Rnor_6.0X115,624,670 - 115,908,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX115,627,653 - 115,908,693 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,079,131 - 114,359,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,989,907 - 34,126,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X33,897,584 - 34,179,644 (+)NCBI
CeleraX107,338,307 - 107,473,426 (-)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Canonical transient receptor potential channels promote cardiomyocyte hypertrophy through activation of calcineurin signaling. Bush EW, etal., J Biol Chem. 2006 Nov 3;281(44):33487-96. Epub 2006 Sep 1.
2. Rat hypocretin/orexin neurons are maintained in a depolarized state by TRPC channels. Cvetkovic-Lopes V, etal., PLoS One. 2010 Dec 16;5(12):e15673. doi: 10.1371/journal.pone.0015673.
3. Transient receptor potential canonical 5 channels activate Ca2+/calmodulin kinase Igamma to promote axon formation in hippocampal neurons. Davare MA, etal., J Neurosci. 2009 Aug 5;29(31):9794-808. doi: 10.1523/JNEUROSCI.1544-09.2009.
4. Brain-derived neurotrophic factor activation of CaM-kinase kinase via transient receptor potential canonical channels induces the translation and synaptic incorporation of GluA1-containing calcium-permeable AMPA receptors. Fortin DA, etal., J Neurosci. 2012 Jun 13;32(24):8127-37. doi: 10.1523/JNEUROSCI.6034-11.2012.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Proteomic analysis of TRPC5- and TRPC6-binding partners reveals interaction with the plasmalemmal Na(+)/K(+)-ATPase. Goel M, etal., Pflugers Arch. 2005 Oct;451(1):87-98. Epub 2005 Jul 16.
8. TRPC5 is a regulator of hippocampal neurite length and growth cone morphology. Greka A, etal., Nat Neurosci 2003 Aug;6(8):837-45.
9. TRPC5 channel is the mediator of neurotrophin-3 in regulating dendritic growth via CaMKIIalpha in rat hippocampal neurons. He Z, etal., J Neurosci. 2012 Jul 4;32(27):9383-95. doi: 10.1523/JNEUROSCI.6363-11.2012.
10. Mechanisms controlling neurite outgrowth in a pheochromocytoma cell line: the role of TRPC channels. Kumar S, etal., J Cell Physiol. 2012 Apr;227(4):1408-19. doi: 10.1002/jcp.22855.
11. TRPC5 as a candidate for the nonselective cation channel activated by muscarinic stimulation in murine stomach. Lee YM, etal., Am J Physiol Gastrointest Liver Physiol 2003 Apr;284(4):G604-16.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. GOA pipeline RGD automated data pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Inhibition of the TRPC5 ion channel protects the kidney filter. Schaldecker T, etal., J Clin Invest. 2013 Dec;123(12):5298-309. doi: 10.1172/JCI71165. Epub 2013 Nov 15.
18. A role of canonical transient receptor potential 5 channel in neuronal differentiation from A2B5 neural progenitor cells. Shin HY, etal., PLoS One. 2010 May 7;5(5):e10359. doi: 10.1371/journal.pone.0010359.
19. Formation of novel TRPC channels by complex subunit interactions in embryonic brain. Strubing C, etal., J Biol Chem. 2003 Oct 3;278(40):39014-9. Epub 2003 Jul 11.
20. Activation of TRPC cationic channels by mercurial compounds confers the cytotoxicity of mercury exposure. Xu SZ, etal., Toxicol Sci. 2012 Jan;125(1):56-68. doi: 10.1093/toxsci/kfr268. Epub 2011 Oct 9.
Additional References at PubMed
PMID:11301024   PMID:14505576   PMID:15199065   PMID:15334657   PMID:15689561   PMID:16469785   PMID:16635549   PMID:17593972   PMID:18247362   PMID:18250430   PMID:20164195   PMID:20865744  
PMID:21753024   PMID:22135323   PMID:22201561   PMID:23677990   PMID:25958233   PMID:27129253   PMID:27411851   PMID:31878108   PMID:32434348  


Genomics

Comparative Map Data
Trpc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X107,946,163 - 108,230,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,939,131 - 108,230,991 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX110,094,300 - 110,229,890 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X113,594,020 - 113,729,628 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X111,146,259 - 111,281,824 (-)NCBIRnor_WKY
Rnor_6.0X115,624,670 - 115,908,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX115,627,653 - 115,908,693 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X114,079,131 - 114,359,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,989,907 - 34,126,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X33,897,584 - 34,179,644 (+)NCBI
CeleraX107,338,307 - 107,473,426 (-)NCBICelera
Cytogenetic MapXq34NCBI
TRPC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X111,768,011 - 112,082,776 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX111,768,011 - 112,082,776 (-)EnsemblGRCh38hg38GRCh38
GRCh37X111,011,239 - 111,326,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X110,904,198 - 111,212,660 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X110,823,686 - 111,132,149NCBI
CeleraX111,497,049 - 111,805,514 (-)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX100,639,095 - 100,946,273 (-)NCBIHuRef
CHM1_1X110,928,786 - 111,237,228 (-)NCBICHM1_1
T2T-CHM13v2.0X110,216,352 - 110,531,119 (-)NCBIT2T-CHM13v2.0
Trpc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X143,160,323 - 143,471,176 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX143,164,667 - 143,471,176 (-)EnsemblGRCm39 Ensembl
GRCm38X144,377,327 - 144,688,180 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX144,381,671 - 144,688,180 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X140,816,214 - 141,122,723 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X139,628,039 - 139,934,548 (-)NCBIMGSCv36mm8
CeleraX128,337,325 - 128,644,030 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX65.49NCBI
Trpc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554903,860,909 - 4,057,275 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554903,777,756 - 4,057,275 (+)NCBIChiLan1.0ChiLan1.0
TRPC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1X111,259,955 - 111,569,945 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X100,886,122 - 101,191,425 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X111,346,804 - 111,648,332 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX111,346,804 - 111,648,201 (-)Ensemblpanpan1.1panPan2
TRPC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X84,835,130 - 84,989,609 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX84,801,096 - 85,116,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX70,936,399 - 71,117,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X86,509,906 - 86,696,508 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX86,512,806 - 86,801,707 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X83,981,630 - 84,160,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X85,658,324 - 85,832,221 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X85,498,131 - 85,680,673 (-)NCBIUU_Cfam_GSD_1.0
Trpc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X84,110,276 - 84,383,058 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364993,343,669 - 3,543,035 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049364993,391,386 - 3,541,406 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX91,721,644 - 91,988,120 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X91,716,334 - 91,988,364 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X106,133,833 - 106,399,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X99,546,923 - 99,856,971 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX99,550,595 - 99,736,668 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606524,918,626 - 25,161,347 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248033,666,276 - 3,813,401 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248033,494,311 - 3,812,985 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpc5
375 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000009400
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat

Markers in Region
BF401448  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X107,966,051 - 107,966,200 (+)MAPPERmRatBN7.2
Rnor_6.0X115,642,629 - 115,642,777NCBIRnor6.0
Rnor_5.0X114,096,065 - 114,096,213UniSTSRnor5.0
RGSC_v3.4X34,111,718 - 34,111,866UniSTSRGSC3.4
CeleraX107,353,675 - 107,353,823UniSTS
RH 3.4 Map71130.32UniSTS
Cytogenetic MapXq14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 32 1
Low 20 11 3 36 8 16 2
Below cutoff 17 20 15 13 15 6 6 6 27 24 7 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000009400   ⟹   ENSRNOP00000009400
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX107,939,131 - 108,230,991 (-)Ensembl
Rnor_6.0 EnsemblX115,627,852 - 115,764,217 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091423   ⟹   ENSRNOP00000071700
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX107,939,131 - 108,230,991 (-)Ensembl
Rnor_6.0 EnsemblX115,627,653 - 115,908,693 (-)Ensembl
RefSeq Acc Id: NM_080898   ⟹   NP_543174
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X107,950,685 - 108,086,239 (-)NCBI
Rnor_6.0X115,627,852 - 115,764,217 (-)NCBI
Rnor_5.0X114,079,131 - 114,359,862 (-)NCBI
RGSC_v3.4X33,989,907 - 34,126,175 (+)RGD
CeleraX107,338,307 - 107,473,426 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601900   ⟹   XP_017457389
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X107,946,163 - 108,230,978 (-)NCBI
Rnor_6.0X115,624,670 - 115,908,248 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_543174 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457389 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL40872 (Get FASTA)   NCBI Sequence Viewer  
  ABS00942 (Get FASTA)   NCBI Sequence Viewer  
  EDL85183 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_543174   ⟸   NM_080898
- UniProtKB: Q8VD38 (UniProtKB/TrEMBL),   F1M176 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457389   ⟸   XM_017601900
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000071700   ⟸   ENSRNOT00000091423
RefSeq Acc Id: ENSRNOP00000009400   ⟸   ENSRNOT00000009400
Protein Domains
Ion transport   Transient receptor ion channel

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K149-F1-model_v2 AlphaFold A0A0G2K149 1-973 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619787 AgrOrtholog
BioCyc Gene G2FUF-1486 BioCyc
Ensembl Genes ENSRNOG00000027233 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000009400 ENTREZGENE
  ENSRNOP00000009400.7 UniProtKB/TrEMBL
  ENSRNOP00000071700.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009400 ENTREZGENE
  ENSRNOT00000009400.7 UniProtKB/TrEMBL
  ENSRNOT00000091423.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  TRP_2 UniProtKB/TrEMBL
  TRPC5_channel UniProtKB/TrEMBL
  TRPC_channel UniProtKB/TrEMBL
KEGG Report rno:140933 UniProtKB/TrEMBL
NCBI Gene 140933 ENTREZGENE
PANTHER PTHR10117 UniProtKB/TrEMBL
  PTHR10117:SF76 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
  TRP_2 UniProtKB/TrEMBL
PhenoGen Trpc5 PhenoGen
PRINTS TRNSRECEPTRP UniProtKB/TrEMBL
  TRPCHANNEL5 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
TIGRFAMs trp UniProtKB/TrEMBL
UniProt A0A0G2K149_RAT UniProtKB/TrEMBL
  F1M176 ENTREZGENE
  Q8VD38 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1M176 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Trpc5  transient receptor potential cation channel, subfamily C, member 5  Trrp5  transient receptor protein 5  Symbol and Name updated 1299863 APPROVED
2002-08-07 Trrp5  transient receptor protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction interacts with stathmin 2 1304405