Trpc5 (transient receptor potential cation channel subfamily C member 5) - Rat Genome Database

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Gene: Trpc5 (transient receptor potential cation channel subfamily C member 5) Ictidomys tridecemlineatus
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Symbol: Trpc5
Name: transient receptor potential cation channel subfamily C member 5
RGD ID: 12612053
Description: ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN negative regulation of dendrite morphogenesis (ortholog); neuron apoptotic process (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH Albuminuria (ortholog); autistic disorder (ortholog); dilated cardiomyopathy 1H (ortholog); FOUND IN calcium channel complex (ortholog); cytoplasm (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC110597935; short transient receptor potential channel 5; uncharacterized LOC110597935
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X84,110,276 - 84,383,058 (-)NCBI
SpeTri2.0NW_0049364993,391,386 - 3,541,406 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Trpc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X84,110,276 - 84,383,058 (-)NCBI
SpeTri2.0NW_0049364993,391,386 - 3,541,406 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX111,768,011 - 112,082,776 (-)EnsemblGRCh38hg38GRCh38
GRCh38X111,768,011 - 112,082,943 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X111,011,239 - 111,326,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X110,904,198 - 111,212,660 (-)NCBINCBI36hg18NCBI36
Build 34X110,823,686 - 111,132,149NCBI
CeleraX111,497,049 - 111,805,514 (-)NCBI
Cytogenetic MapXq23NCBI
HuRefX100,639,095 - 100,946,273 (-)NCBIHuRef
CHM1_1X110,928,786 - 111,237,228 (-)NCBICHM1_1
Trpc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X143,160,323 - 143,471,176 (-)NCBIGRCm39mm39
GRCm39 EnsemblX143,164,667 - 143,471,176 (-)Ensembl
GRCm38X144,377,327 - 144,688,180 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX144,381,671 - 144,688,180 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X140,816,214 - 141,122,723 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X139,628,039 - 139,934,548 (-)NCBImm8
CeleraX128,337,325 - 128,644,030 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX65.49NCBI
Trpc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X107,946,163 - 108,230,978 (-)NCBI
Rnor_6.0 EnsemblX115,627,653 - 115,908,693 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X115,624,670 - 115,908,248 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X114,079,131 - 114,359,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,989,907 - 34,126,175 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X33,897,584 - 34,179,644 (+)NCBI
CeleraX107,338,307 - 107,473,426 (-)NCBICelera
Cytogenetic MapXq34NCBI
Trpc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554903,860,909 - 4,057,275 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554903,777,756 - 4,057,275 (+)NCBIChiLan1.0ChiLan1.0
TRPC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X111,346,804 - 111,648,332 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX111,346,804 - 111,648,201 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X100,886,122 - 101,191,425 (-)NCBIMhudiblu_PPA_v0panPan3
TRPC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X84,835,130 - 84,989,609 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX84,801,096 - 85,116,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX70,936,399 - 71,117,033 (-)NCBI
ROS_Cfam_1.0X86,509,906 - 86,696,508 (-)NCBI
UMICH_Zoey_3.1X83,981,630 - 84,160,857 (-)NCBI
UNSW_CanFamBas_1.0X85,658,324 - 85,832,221 (-)NCBI
UU_Cfam_GSD_1.0X85,498,131 - 85,680,673 (-)NCBI
TRPC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX91,721,617 - 91,988,120 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X91,716,334 - 91,988,364 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X106,133,833 - 106,399,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X99,546,923 - 99,856,971 (-)NCBI
ChlSab1.1 EnsemblX99,550,595 - 99,736,668 (-)Ensembl
Vero_WHO_p1.0NW_02366606524,918,626 - 25,161,347 (-)NCBI
Trpc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248033,494,311 - 3,812,985 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005323340   ⟹   XP_005323397
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X84,110,276 - 84,383,058 (-)NCBI
SpeTri2.0NW_0049364993,391,386 - 3,541,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284490   ⟹   XP_040140424
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X84,110,276 - 84,383,058 (-)NCBI
RefSeq Acc Id: XM_040284501   ⟹   XP_040140435
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X84,110,276 - 84,383,058 (-)NCBI
RefSeq Acc Id: XM_040284507   ⟹   XP_040140441
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X84,110,276 - 84,251,347 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005323397 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140424 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140435 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140441 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3272748 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005323397   ⟸   XM_005323340
- Peptide Label: isoform X1
- UniProtKB: I3LYD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140424   ⟸   XM_040284490
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140435   ⟸   XM_040284501
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140441   ⟸   XM_040284507
- Peptide Label: isoform X2
Protein Domains
ANK_REP_REGION   Ion_trans   TRP_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001320 ENTREZGENE
Ensembl Protein ENSSTOP00000001182 ENTREZGENE
NCBI Gene Trpc5 ENTREZGENE
UniProt I3LYD3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Trpc5  transient receptor potential cation channel subfamily C member 5  LOC110597935  uncharacterized LOC110597935  Data Merged 737654 PROVISIONAL