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Gene: Pabpc5 (poly A binding protein, cytoplasmic 5) Rattus norvegicus
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Symbol: Pabpc5
Name: poly A binding protein, cytoplasmic 5
Description: Predicted to have mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to localize to several cellular components, including the cytoplasmic stress granule; cytosol; and ribonucleoprotein complex. Orthologous to human PABPC5 (poly(A) binding protein cytoplasmic 5); PARTICIPATES IN mRNA decay pathway; RNA degradation pathway; RNA transport pathway; INTERACTS WITH bisphenol A; benzo[a]pyrene (ortholog); dorsomorphin (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC688518; poly A binding protein, cytoplasmic 5-like; polyadenylate-binding protein 5; similar to poly A binding protein, cytoplasmic 5
Orthologs:
Homo sapiens (human) : PABPC5 (poly(A) binding protein cytoplasmic 5)  HGNC  Alliance
Mus musculus (house mouse) : Pabpc5 (poly(A) binding protein, cytoplasmic 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pabpc5 (poly(A) binding protein cytoplasmic 5)
Pan paniscus (bonobo/pygmy chimpanzee) : PABPC5 (poly(A) binding protein cytoplasmic 5)
Canis lupus familiaris (dog) : PABPC5 (poly(A) binding protein cytoplasmic 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pabpc5 (poly(A) binding protein cytoplasmic 5)
Sus scrofa (pig) : LOC100518351 (polyadenylate-binding protein 5)
Chlorocebus sabaeus (African green monkey) : PABPC5 (poly(A) binding protein cytoplasmic 5)
Heterocephalus glaber (naked mole-rat) : Pabpc5 (poly(A) binding protein cytoplasmic 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X92,130,292 - 92,133,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX92,131,209 - 92,132,357 (+)Ensembl
Rnor_5.0X92,037,490 - 92,038,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X109,402,246 - 109,404,584 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX86,791,881 - 86,793,029 (+)NCBICelera
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pabpc5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1587661
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.