Cct5-ps1 (chaperonin containing TCP1 subunit 5, pseudogene 1) - Rat Genome Database

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Gene: Cct5-ps1 (chaperonin containing TCP1 subunit 5, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Cct5-ps1
Name: chaperonin containing TCP1 subunit 5, pseudogene 1
RGD ID: 1589048
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: Cct5-1p; hypothetical protein LOC685838; LOC685838
Related Functional Gene: Cct5  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X91,800,572 - 91,801,840 (-)NCBIGRCr8
mRatBN7.2X87,562,206 - 87,563,474 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_UtxX89,223,078 - 89,224,346 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X92,669,955 - 92,671,223 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X90,227,030 - 90,228,298 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X94,223,863 - 94,225,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X94,118,446 - 94,119,517 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X111,419,482 - 111,420,405 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX88,712,054 - 88,713,314 (-)NCBICelera
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15057822   PMID:20193073  


Genomics

Variants

.
Variants in Cct5-ps1
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1761 BioCyc
NCBI Gene 685838 ENTREZGENE
PhenoGen Cct5-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-29 Cct5-ps1  chaperonin containing TCP1 subunit 5, pseudogene 1  LOC685838  hypothetical protein LOC685838  Name and Symbol changed 629549 APPROVED
2008-01-09 LOC685838  hypothetical protein LOC685838  LOC683312  hypothetical protein LOC683312  Data merged from RGD:1588057 1643240 APPROVED
2006-11-19 LOC685838  hypothetical protein LOC685838      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683312  hypothetical protein LOC683312      Symbol and Name status set to provisional 70820 PROVISIONAL