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Gene: Slc25a43 (solute carrier family 25, member 43) Rattus norvegicus

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Symbol:

Slc25a43

Name:

solute carrier family 25, member 43

RGD ID:

1559928

Description:

Predicted to be involved in transmembrane transport. Predicted to be located in membrane and mitochondrion. Orthologous to human SLC25A43 (solute carrier family 25 member 43); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC298318; RGD1559928; similar to mitochondrial solute carrier protein; solute carrier family 25 member 43

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	120,843,181 - 120,877,515 (+)	NCBI		GRCr8
mRatBN7.2	X	115,977,437 - 116,011,789 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	115,977,510 - 116,011,205 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	123,349,836 - 123,384,798 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,350,346 - 123,384,846 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	123,495,546 - 123,529,964 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	8,096,134 - 8,129,172 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	115,207,320 - 115,241,851 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

syndromic X-linked intellectual disability 14 (ISO)

syndromic X-linked intellectual disability Cabezas type (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

GW 4064 (ISO)

methyl methanesulfonate (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

quercetin (ISO)

SB 431542 (ISO)

sodium dodecyl sulfate (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

mitochondrion (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18614015

Genomics

Comparative Map Data

Slc25a43
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	120,843,181 - 120,877,515 (+)	NCBI		GRCr8
mRatBN7.2	X	115,977,437 - 116,011,789 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	115,977,510 - 116,011,205 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	123,349,836 - 123,384,798 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,350,346 - 123,384,846 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	123,495,546 - 123,529,964 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	8,096,134 - 8,129,172 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	115,207,320 - 115,241,851 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

SLC25A43
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	119,399,336 - 119,454,478 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	119,399,336 - 119,454,478 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	118,533,299 - 118,588,441 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	118,417,051 - 118,472,462 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	118,987,995 - 119,043,163 (+)	NCBI		Celera
Cytogenetic Map	X	q24	NCBI
HuRef	X	108,026,280 - 108,081,595 (+)	NCBI		HuRef
CHM1_1	X	118,444,484 - 118,499,613 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	117,777,069 - 117,832,189 (+)	NCBI		T2T-CHM13v2.0

Slc25a43
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	36,007,223 - 36,040,960 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	36,007,312 - 36,040,855 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	36,743,570 - 36,777,307 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	36,743,659 - 36,777,202 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	34,283,654 - 34,317,197 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	33,175,104 - 33,208,667 (+)	NCBI		MGSCv36	mm8
Celera	X	23,467,500 - 23,501,050 (+)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI
cM Map	X	21.15	NCBI

Slc25a43
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955534	510,898 - 548,047 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955534	513,757 - 548,027 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A43
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	118,783,908 - 118,833,815 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	118,787,584 - 118,838,056 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	108,435,500 - 108,485,383 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	118,861,673 - 118,910,892 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	118,861,673 - 118,910,892 (+)	Ensembl	panpan1.1		panPan2

SLC25A43
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	91,471,700 - 91,511,373 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	91,471,642 - 91,509,790 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	77,548,122 - 77,586,215 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	93,212,826 - 93,250,836 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	93,212,102 - 93,249,250 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	90,665,636 - 90,703,655 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	92,424,339 - 92,462,345 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	92,153,245 - 92,191,350 (+)	NCBI		UU_Cfam_GSD_1.0

Slc25a43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	90,488,242 - 90,531,863 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	10,453,187 - 10,499,251 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	10,455,632 - 10,499,224 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A43
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	97,868,696 - 97,906,760 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	97,868,804 - 97,906,771 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	113,758,765 - 113,796,853 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A43
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	32,147,116 - 32,195,759 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a43
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624895	3,428,522 - 3,459,848 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624895	3,428,439 - 3,460,829 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc25a43
157 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	41
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000017026
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
5685004	Bss104	Bone structure and strength QTL 104	3.9		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	X	113805422	126975220	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
724551	Glom1	Glomerulus QTL 1	2.8	0.0004	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	X	75294106	120294106	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003752132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003754845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005498125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017026 ⟹ ENSRNOP00000017026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	115,977,510 - 116,011,205 (+)	Ensembl
Rnor_6.0 Ensembl	X	123,350,346 - 123,384,846 (+)	Ensembl

RefSeq Acc Id:

XM_003752132 ⟹ XP_003752180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,843,181 - 120,877,515 (+)	NCBI
mRatBN7.2	X	115,977,447 - 116,011,789 (+)	NCBI
Rnor_6.0	X	123,349,836 - 123,384,798 (+)	NCBI
Rnor_5.0	X	123,495,546 - 123,529,964 (+)	NCBI

Sequence:

show sequence

CACACTCTCTGAAAATGAGGCCCTATCTGCTAAAAAGCTGGTTTGTGTGAGCCACGATTGGCAA
GTGTCTGCTAGGTAGCAGCTGTGGTTGGTACTCAAGGTCTGTCTTTTCTGCACTCAGGATTTAA
AATAAAAGAGGCTGATGGAAGAGAAGATAGTCAGGAGAGCGGGGAGGAGATAGAATGTGAAAAG
GGACCCAGAAGAAGCAAGGTACCTACAGGGATACCTAAGAAATGCGTGTTGCTGGCTAGGCCTT
GAAAGAACAGAGTGACTATTCGCCACAGAAAATGGAAGCCTCGGTCTTGCCTATTGCGTTGCAA
ACAGACACTGACTGAGCATGCCTCAGATACCTGAGAGATTCGCCTTTGATCCCACCCTAACCCC
GAGGCGCTGCTCGGGTGTGAACCTGGCTTCCCGAGTTCACCTCGCAAGTCCGCCCCAAGCCGGG
CGGGGCCTGGCCGGACTGCTCTAACTACCCCGCGAGCCCAGGGCACCAGCCACGAGGTGGCCGG
CACAGGGCTGGGTCTGGATGGCTACGTGGAGGCGGGATGGCCGGCTAACCGGCAGCCAGAGGTT
CCTGTGTGCGGGGCTGGCGGGGGCGTTCAGCCTTAGTCTCACCGCGCCCCTGGAGCTCGCCACT
GTGCTGGCCCAAGTCGGCAGGGTGCAAAGCCACTCCCAGGGACTGTGGGCCACCGGACGCCGTG
TGTGGCTGTCCGAAGGGCCAAGAGCCCTGTGGAAAGGGAATGGCGTGGCGTGCCTGCGCCTCTT
CCCCTGCAGTGTGGTGCAGCTGGCTGCCTACCGAAAGTTTGTTGTGTTATTCATGGATGACCTG
GGCCGTATTTCCCAGTGGAGCTCCATTGTGGCTGGAAGTCTCGCAGGCATGGTTTCCACGATTG
TCACATACCCTACAGACCTCATCAAAACCCGATTGATTGTGCAGAACATGCTGGAACCATCTTA
CAGGGGGCTTATTCATGCTCTTTCTACTATTTATCAACAAGAAGGGTTCCTGGCTCTTTATCGA
GGGGCATCCCTCACTGTTTTAGGTGCTGTTCCCTTCTCGGCTGGCTCTCTTCTAGTTTACATGA
ACCTGGAAAAAATCTGGACTGGACCCCGGGACCGCTTTTCTCACCTGCAGAACTTTGCCACCGT
CTGTGTGGCTGCTGCTGTGAGCCAGGCTGTCTCATTTCCCTTTGACACTGTGAAGAGAAAGATG
CAGGCTCAAAGCCCTTATCTTCCCCACTATGGAGGAGTAGATATCCACTTCTCAGGAGCAGTTG
ACTGCTTCAGACAGATAGTGAAGACCCAAGGGGTCCTGGGGCTCTGGAACGGACTAACGGCTAA
CTTACTAAAGGTAGTTCCATATTTTGGAGTTATGTTTGGCATGTTTGAGTTCTGTAAGAGAATC
TTTCTTTATCAAAATGGTTACACCCTGTCCCCCCTGACCTACAAACTAACCCCAGGAGTGGACC
AAAGTTTGAAGCCCCAAGAGTTACGGGAATTAAAGAAGTTATTCTAACCCAGAAGACTGCACTC
GAAAATACCAACTCTGTAAAACTGAACGAAACTACCCTGGTAGAGGTACAGCACTGACAGATGA
ATATGACCTCTGAACTGTGCACATCCGGAGGGGAGAGAAGAAATGAGAGGACTAGACCATACAT
CACCTCGGAACTGCAAACTTTCCCTGTGAATATCTGTGCTTGGAGAAGCTTCTCTGACACTGCC
CTGTCACTATGGCAATCCAGCAGACTGTAAGAAAGCCTAGAGGTAATCACATGTGCAATAGACC
CTCCCCTCCGAGGGGAGAGAGAAACACCGTGCAAAGAAGCATAGCCACAGCACTTCAAAGCATC
TTGTAGCTGAGGAGGCAGAGCAGAGACTGTGGCACAAGCCCAGTCACAGGAGTCCCCATTGAGT
AGGCCAAGTTCAATGTCTTTGACCTATGGCTTCCCCACACAGACTTCTGAAACTCTGCTGGCTT
CTGAGAGCACGAACCACCCTGTAGGTTAGGACTTATCAAAATCTCCAAATAAAAACATTTTTTT
GTTTTTCAAATGATCTTGATACAAAGTCCAGGCTGCCGTCAGAGTCGCGATGCTCCGGCCTAGC
CTCCCAGGTGGCTGGGATGAAAAGTGTGTTCTGCCACACTGGGACCCTAGAGCCCTCATTCTTT
ATTGAAAAACCAAGCAGCCCAAGCTTAGAAGCTTTTATTTCAAGAAGGCAGTTTTCTCCAGGAT
TTCTACCTCCGATCCCCCACACCTACCTGGGTCAAGGTTTCTCTGTGTTTGCTGGCTTTCCTGG
TACTCACTCTATAGACAAGGCCAGTCTTGAACTCACAGAGATCCTCCTGCCTCTGCCTCCCAAG
TGCTGGAATTAAAGGTGTGCAACACTACCGCCTGGCCCCCATGACTTGTTAATGATGCACTGAG
ATTCCTGACTAAAGCCATGTACAGTTCCAATGGCTTTAATTATCTGCCGTTTTAACTTGCTCTG
TAAGCTCTGTACCCTGAAAATAAATTTTTTAATCATCTTCAATTATTTTCACAAGACATCCTAG
TTGCCTAGAAAATTTCAGATAGAAGATATGACACACATACTCCCCCAAAATGTCTTGAAATTAA
AATCCTTTATAAAGTT

hide sequence

RefSeq Acc Id:

XM_039100201 ⟹ XP_038956129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,843,205 - 120,855,466 (+)	NCBI
mRatBN7.2	X	115,977,437 - 115,989,736 (+)	NCBI

RefSeq Acc Id:

XM_063280362 ⟹ XP_063136432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,843,206 - 120,866,713 (+)	NCBI

RefSeq Acc Id:

XR_005498125

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	120,843,206 - 120,874,997 (+)	NCBI
mRatBN7.2	X	115,977,442 - 116,009,272 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419807	(Get FASTA)	NCBI Sequence Viewer
	XP_003752180	(Get FASTA)	NCBI Sequence Viewer
	XP_038956129	(Get FASTA)	NCBI Sequence Viewer
	XP_063136432	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017026.5

RefSeq Acc Id:

XP_003752180 ⟸ XM_003752132

- Peptide Label:

isoform X1

- Sequence:

show sequence

MATWRRDGRLTGSQRFLCAGLAGAFSLSLTAPLELATVLAQVGRVQSHSQGLWATGRRVWLSEG
PRALWKGNGVACLRLFPCSVVQLAAYRKFVVLFMDDLGRISQWSSIVAGSLAGMVSTIVTYPTD
LIKTRLIVQNMLEPSYRGLIHALSTIYQQEGFLALYRGASLTVLGAVPFSAGSLLVYMNLEKIW
TGPRDRFSHLQNFATVCVAAAVSQAVSFPFDTVKRKMQAQSPYLPHYGGVDIHFSGAVDCFRQI
VKTQGVLGLWNGLTANLLKVVPYFGVMFGMFEFCKRIFLYQNGYTLSPLTYKLTPGVDQSLKPQ
ELRELKKLF

hide sequence

Ensembl Acc Id:

ENSRNOP00000017026 ⟸ ENSRNOT00000017026

RefSeq Acc Id:	XP_038956129 ⟸ XM_039100201
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063136432 ⟸ XM_063280362
- Peptide Label:	isoform X2
- UniProtKB:	A6JMF7 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZG94-F1-model_v2	AlphaFold	D3ZG94	1-329	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701986

Promoter ID:

EPDNEW_R12505

Type:

single initiation site

Name:

Slc25a43_1

Description:

solute carrier family 25, member 43

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	123,350,335 - 123,350,395	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559928	AgrOrtholog
BioCyc Gene	G2FUF-1312	BioCyc
Ensembl Genes	ENSRNOG00000012756	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017026.7	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
InterPro	Mit_carrier	UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom	UniProtKB/TrEMBL
KEGG Report	rno:298318	UniProtKB/TrEMBL
NCBI Gene	298318	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 25	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 25 MEMBER 43	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PhenoGen	Slc25a43	PhenoGen
PRINTS	MITOCARRIER	UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012756	RatGTEx
Superfamily-SCOP	Mitoch_carrier	UniProtKB/TrEMBL
UniProt	A6JMF7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZG94	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-22	Slc25a43	solute carrier family 25, member 43	RGD1559928	similar to mitochondrial solute carrier protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1559928	similar to mitochondrial solute carrier protein	RGD1559928_predicted	similar to mitochondrial solute carrier protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1559928_predicted	similar to mitochondrial solute carrier protein (predicted)	LOC298318	similar to mitochondrial solute carrier protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC298318	similar to mitochondrial solute carrier protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar