Tsc22d3 (TSC22 domain family, member 3)

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Gene: Tsc22d3 (TSC22 domain family, member 3) Rattus norvegicus

Analyze

Symbol:

Tsc22d3

Name:

TSC22 domain family, member 3

RGD ID:

621654

Description:

Predicted to enable MRF binding activity. Involved in body fluid secretion. Predicted to be located in cytoplasm and nucleus. Orthologous to human TSC22D3 (TSC22 domain family member 3); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

delta sleep inducing peptide, immunoreactor; Dsipi; Gilz; glucocorticoid-induced leucine zipper; TSC22 domain family 3; TSC22 domain family protein 3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSC22D3 (TSC22 domain family member 3)	HGNC	Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Tsc22d3 (TSC22 domain family, member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tsc22d3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TSC22D3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSC22D3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tsc22d3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSC22D3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSC22D3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tsc22d3 (TSC22 domain family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tsc22d3 (TSC22 domain family, member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TSC22D3 (TSC22 domain family member 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tsc22d3 (TSC22 domain family, member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T18D3.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	bun	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	tsc22d3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	104,217,898 - 104,277,935 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,217,925 - 104,276,861 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	106,347,240 - 106,407,215 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	X	109,845,976 - 109,905,951 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	X	107,401,045 - 107,460,983 (-)	NCBI	Rnor_WKY
Rnor_6.0	X	111,884,285 - 111,944,693 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	111,884,295 - 111,887,906 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	52,655,031 - 52,715,433 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	128,336,408 - 128,340,027 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	128,409,842 - 128,413,460 (-)	NCBI
Celera	3	43,710,349 - 43,713,973 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Charcot-Marie-Tooth disease type X (ISO)

COVID-19 (ISO)

genetic disease (ISO)

hyperinsulinism (ISO)

male infertility (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

testicular disease (ISO)

Weight Loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,4-dioxane (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-phenoxybenzoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antimonite (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

avobenzone (ISO)

azoxystrobin (EXP)

barium chloride (ISO)

barium(0) (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bexarotene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

boron nitride (ISO)

buspirone (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

calcitriol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP,ISO)

chlorpyrifos (EXP)

ciguatoxin CTX1B (ISO)

cisplatin (EXP,ISO)

clobetasol (ISO)

cobalt atom (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

corticosterone (EXP)

cortisol (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cyhalothrin (ISO)

DDE (ISO)

DDT (ISO)

deguelin (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (EXP)

dibenzo[a,l]pyrene (EXP)

dibutyl phthalate (EXP)

dichloroacetic acid (ISO)

diclofenac (ISO)

dieldrin (ISO)

dimethyl sulfoxide (ISO)

dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate (ISO)

diuron (EXP)

doxorubicin (EXP)

Enterolactone (ISO)

epoxiconazole (ISO)

Erionite (ISO)

erythromycin estolate (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenpyroximate (ISO)

fluoranthene (EXP,ISO)

flutamide (EXP)

folpet (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gallic acid (ISO)

genistein (ISO)

geraniol (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

imidacloprid (EXP)

Indeno[1,2,3-cd]pyrene (ISO)

inulin (ISO)

isoprenaline (ISO)

lactacystin (ISO)

lead diacetate (EXP,ISO)

lead nitrate (ISO)

lead(0) (ISO)

lead(2+) (ISO)

levofloxacin (EXP)

liquiritigenin (ISO)

lithium atom (ISO)

lithium chloride (ISO)

lithium hydride (ISO)

medroxyprogesterone acetate (ISO)

mercury dichloride (EXP)

methamphetamine (EXP)

methoxychlor (ISO)

methyl methanesulfonate (ISO)

metyrapone (EXP)

mifepristone (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-methyl-4-phenylpyridinium (ISO)

nevirapine (EXP)

nickel sulfate (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

oxycodone (EXP)

ozone (EXP,ISO)

paclitaxel (EXP)

paracetamol (ISO)

paraquat (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (ISO)

phenformin (EXP)

phenobarbital (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

progesterone (EXP,ISO)

Ptaquiloside (ISO)

quercetin (EXP)

resmethrin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SCH 23390 (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

succimer (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

thiabendazole (EXP)

thifluzamide (ISO)

tin atom (ISO)

tin(0) (ISO)

tin(II) chloride (anhydrous) (ISO)

titanium dioxide (ISO)

tolylfluanid (ISO)

topotecan (EXP)

trametinib (ISO)

tremolite asbestos (ISO)

tributylstannane (ISO)

triclosan (ISO)

triptonide (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (EXP,ISO)

vandetanib (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc dichloride (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

body fluid secretion (IEP)

negative regulation of activation-induced cell death of T cells (IBA,IEA,ISO)

negative regulation of skeletal muscle tissue development (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IEA)

response to osmotic stress (IEA,ISO)

Cellular Component

cytoplasm (ISO)

nucleus (IEA,ISO)

Molecular Function

MRF binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Mineralocorticoid effects in the kidney: correlation between alphaENaC, GILZ, and Sgk-1 mRNA expression and urinary excretion of Na+ and K+.	Muller OG, etal., J Am Soc Nephrol 2003 May;14(5):1107-15.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8.	Delta sleep-inducing peptide blocks excitatory effects of glutamate on rat brain neurons.	Umriukhin PE Bull Exp Biol Med 2002 Jul;134(1):5-7.

Additional References at PubMed

PMID:9430225	PMID:15489334	PMID:17147695	PMID:17956870	PMID:18643788	PMID:20124407	PMID:22094385	PMID:22124125	PMID:23090754	PMID:25299205	PMID:28728173	PMID:31485805

Genomics

Comparative Map Data

Tsc22d3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	X	104,217,898 - 104,277,935 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,217,925 - 104,276,861 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	106,347,240 - 106,407,215 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	X	109,845,976 - 109,905,951 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	X	107,401,045 - 107,460,983 (-)	NCBI	Rnor_WKY
Rnor_6.0	X	111,884,285 - 111,944,693 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	111,884,295 - 111,887,906 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	52,655,031 - 52,715,433 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	128,336,408 - 128,340,027 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	128,409,842 - 128,413,460 (-)	NCBI
Celera	3	43,710,349 - 43,713,973 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

TSC22D3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	107,713,221 - 107,775,988 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	X	107,713,221 - 107,777,342 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	106,956,451 - 107,019,218 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	106,843,107 - 106,905,673 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	107,427,403 - 107,489,966 (-)	NCBI		Celera
Cytogenetic Map	X	q22.3	NCBI
HuRef	X	96,580,831 - 96,643,067 (-)	NCBI		HuRef
CHM1_1	X	106,867,386 - 106,929,923 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	106,149,979 - 106,212,727 (-)	NCBI		T2T-CHM13v2.0

Tsc22d3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	139,440,277 - 139,501,257 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	139,440,277 - 139,501,408 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	140,539,528 - 140,600,522 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	140,539,528 - 140,600,659 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	137,074,067 - 137,135,061 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	135,885,892 - 135,889,531 (-)	NCBI		MGSCv36	mm8
Celera	X	123,798,019 - 123,859,465 (-)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI

Tsc22d3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	8,177,356 - 8,238,373 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955490	8,177,356 - 8,238,373 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSC22D3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	X	107,193,129 - 107,257,315 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	96,806,179 - 96,870,020 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	107,179,077 - 107,242,902 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	107,179,077 - 107,242,902 (-)	Ensembl	panpan1.1		panPan2

TSC22D3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	81,235,489 - 81,298,290 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	81,235,809 - 81,298,192 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	67,355,142 - 67,417,939 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	82,882,231 - 82,945,043 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	82,882,234 - 82,944,500 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	80,342,439 - 80,405,260 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	82,054,298 - 82,117,113 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	81,846,235 - 81,908,809 (-)	NCBI		UU_Cfam_GSD_1.0

Tsc22d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	80,613,791 - 80,680,477 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	6,977,686 - 7,045,294 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936499	6,977,924 - 7,044,173 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSC22D3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	88,230,048 - 88,233,098 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	88,171,325 - 88,233,583 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	102,611,634 - 102,673,219 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSC22D3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	95,535,798 - 95,606,309 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	20,659,327 - 20,723,753 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tsc22d3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	8,701,221 - 8,763,529 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624803	8,701,348 - 8,762,194 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tsc22d3
117 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	233
Count of miRNA genes:	151
Interacting mature miRNAs:	200
Transcripts:	ENSRNOT00000048080
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
724551	Glom1	Glomerulus QTL 1	2.8	0.0004	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	X	75294106	120294106	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	47	31	19	31	8	11	74	35	38	11	8
Low			10	10		10					3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001400982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001400983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_031345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB025431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000085118 ⟹ ENSRNOP00000072713

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	104,217,925 - 104,221,442 (-)	Ensembl
Rnor_6.0 Ensembl	X	111,884,295 - 111,887,906 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108889 ⟹ ENSRNOP00000081403

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	104,217,925 - 104,227,193 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117710 ⟹ ENSRNOP00000080328

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	104,217,925 - 104,276,861 (-)	Ensembl

RefSeq Acc Id:

NM_031345 ⟹ NP_112635

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	104,217,898 - 104,221,523 (-)	NCBI
Rnor_6.0	X	111,884,285 - 111,887,906 (-)	NCBI
Rnor_5.0	3	52,655,031 - 52,715,433 (+)	NCBI
RGSC_v3.4	X	128,336,408 - 128,340,027 (-)	RGD
Celera	3	43,710,349 - 43,713,973 (+)	NCBI

Sequence:

show sequence

CTGGCGGCTGTGGACTTGTGACATACTAGGTGACACCCCTGGAGCCACTTCCTTTCAACTCCAG
CTTGAAAGTGCCTGCCTGGCTCAGGGTCTGCACTGCAGCCTACTCCTAGCTCCAGGGCTTGACT
GCGGCGTCAGAGCCTATCCTGTAGCAGCGCGCCAGCAGCCACTCAAACCAACCACAGCTCCCCG
GCAACCCGAATCATGAACACCGAAATGTATCAGACGCCCATGGAGGTGGCGGTCTATCAACTGC
ACAATTTCTCCATCTCCTTCTTCTCTTCTCTGCTTGGAGGGGATGTGGTTTCCGTTAAACTGGA
TAACAGTGCCTCTGGAGCCAGCGTGGTGGCCCTAGACAACAAGATTGAGCAGGCCATGGATCTA
GTGAAGAATCATTTGATGTATGCTGTGAGAGAGGAGGTGGAGGTCCTAAAGGAGCAGATTCGTG
AGCTGGTTGAGAAGAACTCGCAGCTGGAGCGTGAGAATACCCTCCTGAAGACGCTGGCGAGCCC
AGAGCAGCTGGAGAAGTTCCAGTCCCGGCTGAGCCCCGAAGAGCCAGCTCCTGAAGCCCCAGAA
ACCCCAGAAGCCCCTGGCGGTTCTGCGGTGTAAGTGGCTCTGTCCTTAGGGTGGGCAGAGCCAC
AACTTGTTCTACCTAGTTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGCGTCATCTCATGTGGAG
AACTTTACACCTAACATAGCTGGTGCCAAGAGATGTCCCAAGGACATGCCCATCTGGGTCCACT
CCAGTGACAGACCCCTGACAAAGAGCAGGTTTGGAGACTGAGTTGCACGGGGCCTAGTAACCCC
AAGCCAGTGAGCTTGTCGTGCCACCGGGCCCTGGGGGCTCCCAGGGTCTGGGCAACTTAGTTCC
AGCTGGCCAAGGAGAAAGTAGTTTTGAGATGGAATGCCAATATGCTCCAGAAAGTATAAGGGGT
CTGTTTTCATTTCCATGGACATCTTCCACAGCTTCACCTGACAACGACTGTTCCTATGAAGAAG
CCACTTGTGTTTTAAGCAGAAGCAACCTCTCTCTTCTCCTCTGTCTTCCAGACGGGGACAGAGA
TGGGAGAGATTGAGCCAAATCAGCCTTCTGTTGGTTAATATTGTATAATGCATGGCTTTGTGCA
CAGCCCAGTGTGGGATTACAGCTTTGGGATGACTGCTTATAAAGTTCTGTTTGGTTAGTATTGG
CATAGTTTTTCTATATAGCCATAAATGCGTATATATATATACCCATAGGGCTAGAACTATATAT
TAGTGTAGTGATGTATACATATACACATACACATACATGTTGAAGGGCCTAACCAGCTTTGGGA
GTACTGACTGGTCTCTTATCTCTTAAAGCTAAGTTTTTGACTGTGCTAATTTACCAAATTGATC
CAGTTTGTCCTTTAGATTAAATAAGACTCGAGATATAAGGGAGGGAGAGGGAGACCAGCCTCAC
CATGCGGCCACAGATGCCTTGCTGCTGCAGCCCTCCCCAATCTGTCCACTGAAGACATGAAGTC
CTTTTGAATGCCAAACCCACCATTCATTGGTGCTGACTACATAGAATGGGGTTGAGAGAAGACC
AGTTTGGACTTCACATTTTTGTTTAAGCTTTAGGTCGGTTTTTTTTTTTTTTTTGTTTTGTTTT
CGTTTGTTTTTGTTTGTTTTTTCTTTTCTTTTTTTTTTAAGTTCTTGTGGGAAACTTTGGGATT
AGTCAAAGGATGGAGTCCTGTGGTAGACAAGAAGAGTAAATAGTTTTGATCCCTTCGGGGCCTG
GAAAATGCACCCAGGAAGCTTGTGAAAGAAGGTTCTGTGACAGTGAACACTTTCCACTTTCTGA
CACCTTATCCTGCTGTATGTCTCCAGGATTTGGATTTTGATTTTTCAGATGTAGCTTGAAATTT
CAATAAACTTTGCTCTTTTTTTCAAAAAATCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234249 ⟹ XP_006234311

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	104,217,898 - 104,276,691 (-)	NCBI
Rnor_6.0	X	111,884,285 - 111,943,310 (-)	NCBI
Rnor_5.0	3	52,655,031 - 52,715,433 (+)	NCBI

Sequence:

show sequence

TGCTGTCACGGCCCGGTGCGGACTCTGAGGCTCGGGGGTAGCTCGTACGCTCGCCCTGGGCTGT
CGCCACCGCGCGATCCGCGGAGCCCGCGGGCCGGAAAGCAGGCTGCCGCTGAGGGCGCGCTGCG
GCTCTCCCTGGCCGCTCGCCCTTCCTGCCGCCTTGCAGCTTGTTTTGCCGGGCACCCTGGAGTC
CGAAAAGGCCAACTCCGCAGGTGCGCACCTGCCCGCCGCCCCTGACGTCCCTGAGCAGGCAGCC
TCTGAGCCCCAGAAGATGGCCCAGCCCAAGATCGAGTGCCGCTCACCTGTCGGCCTCGACTGCT
GCAACTGCTGCCTGGACCTGGCCAACCGCTGCGATCTCCAGAAAGGGAGAAGCGGCGAAAACAA
CCCAGGCAGCCCCACCGTGAGCAACTTTCGGCAGCTGCAGGAAAAGCTGGTCTTCGAGAACCTC
AACACTGACAAGCTCAACAACATAATGCGGCAGGATTCGCTGGAGCCCGTGCTTCGTGACCCCT
GCTACCTGATCAATGAGGGCATCTGCAACCGCAACATCGACCAGACCATGCTCTCCATTCTGCT
CTTCTTCCACAGTGCCTCTGGAGCCAGCGTGGTGGCCCTAGACAACAAGATTGAGCAGGCCATG
GATCTAGTGAAGAATCATTTGATGTATGCTGTGAGAGAGGAGGTGGAGGTCCTAAAGGAGCAGA
TTCGTGAGCTGGTTGAGAAGAACTCGCAGCTGGAGCGTGAGAATACCCTCCTGAAGACGCTGGC
GAGCCCAGAGCAGCTGGAGAAGTTCCAGTCCCGGCTGAGCCCCGAAGAGCCAGCTCCTGAAGCC
CCAGAAACCCCAGAAGCCCCTGGCGGTTCTGCGGTGTAAGTGGCTCTGTCCTTAGGGTGGGCAG
AGCCACAACTTGTTCTACCTAGTTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGCGTCATCTCAT
GTGGAGAACTTTACACCTAACATAGCTGGTGCCAAGAGATGTCCCAAGGACATGCCCATCTGGG
TCCACTCCAGTGACAGACCCCTGACAAAGAGCAGGTTTGGAGACTGAGTTGCACGGGGCCTAGT
AACCCCAAGCCAGTGAGCTTGTCGTGCCACCGGGCCCTGGGGGCTCCCAGGGTCTGGGCAACTT
AGTTCCAGCTGGCCAAGGAGAAAGTAGTTTTGAGATGGAATGCCAATATGCTCCAGAAAGTATA
AGGGGTCTGTTTTCATTTCCATGGACATCTTCCACAGCTTCACCTGACAACGACTGTTCCTATG
AAGAAGCCACTTGTGTTTTAAGCAGAAGCAACCTCTCTCTTCTCCTCTGTCTTCCAGACGGGGA
CAGAGATGGGAGAGATTGAGCCAAATCAGCCTTCTGTTGGTTAATATTGTATAATGCATGGCTT
TGTGCACAGCCCAGTGTGGGATTACAGCTTTGGGATGACTGCTTATAAAGTTCTGTTTGGTTAG
TATTGGCATAGTTTTTCTATATAGCCATAAATGCGTATATATATATACCCATAGGGCTAGAACT
ATATATTAGTGTAGTGATGTATACATATACACATACACATACATGTTGAAGGGCCTAACCAGCT
TTGGGAGTACTGACTGGTCTCTTATCTCTTAAAGCTAAGTTTTTGACTGTGCTAATTTACCAAA
TTGATCCAGTTTGTCCTTTAGATTAAATAAGACTCGAGATATAAGGGAGGGAGAGGGAGACCAG
CCTCACCATGCGGCCACAGATGCCTTGCTGCTGCAGCCCTCCCCAATCTGTCCACTGAAGACAT
GAAGTCCTTTTGAATGCCAAACCCACCATTCATTGGTGCTGACTACATAGAATGGGGTTGAGAG
AAGATCAGTTTGGACTTCACATTTTTGTTTAAGCTTTAGGTCGTTTTTTTTTTTGTTTTGTTTT
CGTTTGTTTTTGTTTGTTTTTTCTTTTCTTTTTTTTTTAAGTTCTTGTGGGAAACTTTGGGATT
AGTCAAAGGATGGAGTCCTGTGGTAGACAAGAAGAGTAAATAGTTTTGATCCCTTCGGGGCCTG
GAAAATGCACCCAGGAAGCTTGTGAAAGAAGGTTCTGTGACAGTGAACACTTTCCACTTTCTGA
CACCTTATCCTGCTGTATGTCTCCAGGATTTGGATTTTGATTTTTCAGATGTAGCTTGAAATTT
CAATAAACTTTGCTCTTTTTTTCAAAAAATCAA

hide sequence

RefSeq Acc Id:

XM_006234250 ⟹ XP_006234312

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	104,217,898 - 104,277,935 (-)	NCBI
Rnor_6.0	X	111,884,285 - 111,944,693 (-)	NCBI
Rnor_5.0	3	52,655,031 - 52,715,433 (+)	NCBI

Sequence:

show sequence

CCCTTCTGGCTCTGCGTGCGTGCAGACGGCTGGAGAAGTCTCTGGAGAGATCGACGGAGACCGA
TCACCTGAAGTAGCAGCTTGTTTTGCCGGGCACCCTGGAGTCCGAAAAGGCCAACTCCGCAGGT
GCGCACCTGCCCGCCGCCCCTGACGTCCCTGAGCAGGCAGCCTCTGAGCCCCAGAAGATGGCCC
AGCCCAAGATCGAGTGCCGCTCACCTGTCGGCCTCGACTGCTGCAACTGCTGCCTGGACCTGGC
CAACCGCTGCGATCTCCAGAAAGGGAGAAGCGGCGAAAACAACCCAGGCAGCCCCACCGTGAGC
AACTTTCGGCAGCTGCAGGAAAAGCTGGTCTTCGAGAACCTCAACACTGACAAGCTCAACAACA
TAATGCGGCAGGATTCGCTGGAGCCCGTGCTTCGTGACCCCTGCTACCTGATCAATGAGGGCAT
CTGCAACCGCAACATCGACCAGACCATGCTCTCCATTCTGCTCTTCTTCCACAGTGCCTCTGGA
GCCAGCGTGGTGGCCCTAGACAACAAGATTGAGCAGGCCATGGATCTAGTGAAGAATCATTTGA
TGTATGCTGTGAGAGAGGAGGTGGAGGTCCTAAAGGAGCAGATTCGTGAGCTGGTTGAGAAGAA
CTCGCAGCTGGAGCGTGAGAATACCCTCCTGAAGACGCTGGCGAGCCCAGAGCAGCTGGAGAAG
TTCCAGTCCCGGCTGAGCCCCGAAGAGCCAGCTCCTGAAGCCCCAGAAACCCCAGAAGCCCCTG
GCGGTTCTGCGGTGTAAGTGGCTCTGTCCTTAGGGTGGGCAGAGCCACAACTTGTTCTACCTAG
TTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGCGTCATCTCATGTGGAGAACTTTACACCTAACA
TAGCTGGTGCCAAGAGATGTCCCAAGGACATGCCCATCTGGGTCCACTCCAGTGACAGACCCCT
GACAAAGAGCAGGTTTGGAGACTGAGTTGCACGGGGCCTAGTAACCCCAAGCCAGTGAGCTTGT
CGTGCCACCGGGCCCTGGGGGCTCCCAGGGTCTGGGCAACTTAGTTCCAGCTGGCCAAGGAGAA
AGTAGTTTTGAGATGGAATGCCAATATGCTCCAGAAAGTATAAGGGGTCTGTTTTCATTTCCAT
GGACATCTTCCACAGCTTCACCTGACAACGACTGTTCCTATGAAGAAGCCACTTGTGTTTTAAG
CAGAAGCAACCTCTCTCTTCTCCTCTGTCTTCCAGACGGGGACAGAGATGGGAGAGATTGAGCC
AAATCAGCCTTCTGTTGGTTAATATTGTATAATGCATGGCTTTGTGCACAGCCCAGTGTGGGAT
TACAGCTTTGGGATGACTGCTTATAAAGTTCTGTTTGGTTAGTATTGGCATAGTTTTTCTATAT
AGCCATAAATGCGTATATATATATACCCATAGGGCTAGAACTATATATTAGTGTAGTGATGTAT
ACATATACACATACACATACATGTTGAAGGGCCTAACCAGCTTTGGGAGTACTGACTGGTCTCT
TATCTCTTAAAGCTAAGTTTTTGACTGTGCTAATTTACCAAATTGATCCAGTTTGTCCTTTAGA
TTAAATAAGACTCGAGATATAAGGGAGGGAGAGGGAGACCAGCCTCACCATGCGGCCACAGATG
CCTTGCTGCTGCAGCCCTCCCCAATCTGTCCACTGAAGACATGAAGTCCTTTTGAATGCCAAAC
CCACCATTCATTGGTGCTGACTACATAGAATGGGGTTGAGAGAAGATCAGTTTGGACTTCACAT
TTTTGTTTAAGCTTTAGGTCGTTTTTTTTTTTGTTTTGTTTTCGTTTGTTTTTGTTTGTTTTTT
CTTTTCTTTTTTTTTTAAGTTCTTGTGGGAAACTTTGGGATTAGTCAAAGGATGGAGTCCTGTG
GTAGACAAGAAGAGTAAATAGTTTTGATCCCTTCGGGGCCTGGAAAATGCACCCAGGAAGCTTG
TGAAAGAAGGTTCTGTGACAGTGAACACTTTCCACTTTCTGACACCTTATCCTGCTGTATGTCT
CCAGGATTTGGATTTTGATTTTTCAGATGTAGCTTGAAATTTCAATAAACTTTGCTCTTTTTTT
CAAAAAATCAA

hide sequence

RefSeq Acc Id:

XM_006234251 ⟹ XP_006234313

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	104,217,898 - 104,277,013 (-)	NCBI
Rnor_6.0	X	111,884,285 - 111,943,771 (-)	NCBI
Rnor_5.0	3	52,655,031 - 52,715,433 (+)	NCBI

Sequence:

show sequence

GGGAGAGGAGACAGACGGAGCGGAGACAGACAGTCCTGTCGCCGGGGTAGAGACACAGAAGAGC
CGCGGAGAGCAGAAGGCGCGCGCTCCTGGACGTCCAGCCGCTCAGTCGCTTGTTTTGCCGGGCA
CCCTGGAGTCCGAAAAGGCCAACTCCGCAGGTGCGCACCTGCCCGCCGCCCCTGACGTCCCTGA
GCAGGCAGCCTCTGAGCCCCAGAAGATGGCCCAGCCCAAGATCGAGTGCCGCTCACCTGTCGGC
CTCGACTGCTGCAACTGCTGCCTGGACCTGGCCAACCGCTGCGATCTCCAGAAAGGGAGAAGCG
GCGAAAACAACCCAGGCAGCCCCACCGTGAGCAACTTTCGGCAGCTGCAGGAAAAGCTGGTCTT
CGAGAACCTCAACACTGACAAGCTCAACAACATAATGCGGCAGGATTCGCTGGAGCCCGTGCTT
CGTGACCCCTGCTACCTGATCAATGAGGGCATCTGCAACCGCAACATCGACCAGACCATGCTCT
CCATTCTGCTCTTCTTCCACAGTGCCTCTGGAGCCAGCGTGGTGGCCCTAGACAACAAGATTGA
GCAGGCCATGGATCTAGTGAAGAATCATTTGATGTATGCTGTGAGAGAGGAGGTGGAGGTCCTA
AAGGAGCAGATTCGTGAGCTGGTTGAGAAGAACTCGCAGCTGGAGCGTGAGAATACCCTCCTGA
AGACGCTGGCGAGCCCAGAGCAGCTGGAGAAGTTCCAGTCCCGGCTGAGCCCCGAAGAGCCAGC
TCCTGAAGCCCCAGAAACCCCAGAAGCCCCTGGCGGTTCTGCGGTGTAAGTGGCTCTGTCCTTA
GGGTGGGCAGAGCCACAACTTGTTCTACCTAGTTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGC
GTCATCTCATGTGGAGAACTTTACACCTAACATAGCTGGTGCCAAGAGATGTCCCAAGGACATG
CCCATCTGGGTCCACTCCAGTGACAGACCCCTGACAAAGAGCAGGTTTGGAGACTGAGTTGCAC
GGGGCCTAGTAACCCCAAGCCAGTGAGCTTGTCGTGCCACCGGGCCCTGGGGGCTCCCAGGGTC
TGGGCAACTTAGTTCCAGCTGGCCAAGGAGAAAGTAGTTTTGAGATGGAATGCCAATATGCTCC
AGAAAGTATAAGGGGTCTGTTTTCATTTCCATGGACATCTTCCACAGCTTCACCTGACAACGAC
TGTTCCTATGAAGAAGCCACTTGTGTTTTAAGCAGAAGCAACCTCTCTCTTCTCCTCTGTCTTC
CAGACGGGGACAGAGATGGGAGAGATTGAGCCAAATCAGCCTTCTGTTGGTTAATATTGTATAA
TGCATGGCTTTGTGCACAGCCCAGTGTGGGATTACAGCTTTGGGATGACTGCTTATAAAGTTCT
GTTTGGTTAGTATTGGCATAGTTTTTCTATATAGCCATAAATGCGTATATATATATACCCATAG
GGCTAGAACTATATATTAGTGTAGTGATGTATACATATACACATACACATACATGTTGAAGGGC
CTAACCAGCTTTGGGAGTACTGACTGGTCTCTTATCTCTTAAAGCTAAGTTTTTGACTGTGCTA
ATTTACCAAATTGATCCAGTTTGTCCTTTAGATTAAATAAGACTCGAGATATAAGGGAGGGAGA
GGGAGACCAGCCTCACCATGCGGCCACAGATGCCTTGCTGCTGCAGCCCTCCCCAATCTGTCCA
CTGAAGACATGAAGTCCTTTTGAATGCCAAACCCACCATTCATTGGTGCTGACTACATAGAATG
GGGTTGAGAGAAGATCAGTTTGGACTTCACATTTTTGTTTAAGCTTTAGGTCGTTTTTTTTTTT
GTTTTGTTTTCGTTTGTTTTTGTTTGTTTTTTCTTTTCTTTTTTTTTTAAGTTCTTGTGGGAAA
CTTTGGGATTAGTCAAAGGATGGAGTCCTGTGGTAGACAAGAAGAGTAAATAGTTTTGATCCCT
TCGGGGCCTGGAAAATGCACCCAGGAAGCTTGTGAAAGAAGGTTCTGTGACAGTGAACACTTTC
CACTTTCTGACACCTTATCCTGCTGTATGTCTCCAGGATTTGGATTTTGATTTTTCAGATGTAG
CTTGAAATTTCAATAAACTTTGCTCTTTTTTTCAAAAAATCAA

hide sequence

RefSeq Acc Id:

XM_008773447 ⟹ XP_008771669

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	X	104,217,898 - 104,277,174 (-)	NCBI
Rnor_6.0	X	111,884,285 - 111,943,934 (-)	NCBI

Sequence:

show sequence

AGGCCGTGAGCGCGCCGCTCAGGGGACACCCTGTGAGCCAGCCCCCCCTGCGACCTTTGGCCCA
CTCTGGAGAGCCCGAGACCCCGTGCGCTTGTTTTGCCGGGCACCCTGGAGTCCGAAAAGGCCAA
CTCCGCAGGTGCGCACCTGCCCGCCGCCCCTGACGTCCCTGAGCAGGCAGCCTCTGAGCCCCAG
AAGATGGCCCAGCCCAAGATCGAGTGCCGCTCACCTGTCGGCCTCGACTGCTGCAACTGCTGCC
TGGACCTGGCCAACCGCTGCGATCTCCAGAAAGGGAGAAGCGGCGAAAACAACCCAGGCAGCCC
CACCGTGAGCAACTTTCGGCAGCTGCAGGAAAAGCTGGTCTTCGAGAACCTCAACACTGACAAG
CTCAACAACATAATGCGGCAGGATTCGCTGGAGCCCGTGCTTCGTGACCCCTGCTACCTGATCA
ATGAGGGCATCTGCAACCGCAACATCGACCAGACCATGCTCTCCATTCTGCTCTTCTTCCACAG
TGCCTCTGGAGCCAGCGTGGTGGCCCTAGACAACAAGATTGAGCAGGCCATGGATCTAGTGAAG
AATCATTTGATGTATGCTGTGAGAGAGGAGGTGGAGGTCCTAAAGGAGCAGATTCGTGAGCTGG
TTGAGAAGAACTCGCAGCTGGAGCGTGAGAATACCCTCCTGAAGACGCTGGCGAGCCCAGAGCA
GCTGGAGAAGTTCCAGTCCCGGCTGAGCCCCGAAGAGCCAGCTCCTGAAGCCCCAGAAACCCCA
GAAGCCCCTGGCGGTTCTGCGGTGTAAGTGGCTCTGTCCTTAGGGTGGGCAGAGCCACAACTTG
TTCTACCTAGTTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGCGTCATCTCATGTGGAGAACTTT
ACACCTAACATAGCTGGTGCCAAGAGATGTCCCAAGGACATGCCCATCTGGGTCCACTCCAGTG
ACAGACCCCTGACAAAGAGCAGGTTTGGAGACTGAGTTGCACGGGGCCTAGTAACCCCAAGCCA
GTGAGCTTGTCGTGCCACCGGGCCCTGGGGGCTCCCAGGGTCTGGGCAACTTAGTTCCAGCTGG
CCAAGGAGAAAGTAGTTTTGAGATGGAATGCCAATATGCTCCAGAAAGTATAAGGGGTCTGTTT
TCATTTCCATGGACATCTTCCACAGCTTCACCTGACAACGACTGTTCCTATGAAGAAGCCACTT
GTGTTTTAAGCAGAAGCAACCTCTCTCTTCTCCTCTGTCTTCCAGACGGGGACAGAGATGGGAG
AGATTGAGCCAAATCAGCCTTCTGTTGGTTAATATTGTATAATGCATGGCTTTGTGCACAGCCC
AGTGTGGGATTACAGCTTTGGGATGACTGCTTATAAAGTTCTGTTTGGTTAGTATTGGCATAGT
TTTTCTATATAGCCATAAATGCGTATATATATATACCCATAGGGCTAGAACTATATATTAGTGT
AGTGATGTATACATATACACATACACATACATGTTGAAGGGCCTAACCAGCTTTGGGAGTACTG
ACTGGTCTCTTATCTCTTAAAGCTAAGTTTTTGACTGTGCTAATTTACCAAATTGATCCAGTTT
GTCCTTTAGATTAAATAAGACTCGAGATATAAGGGAGGGAGAGGGAGACCAGCCTCACCATGCG
GCCACAGATGCCTTGCTGCTGCAGCCCTCCCCAATCTGTCCACTGAAGACATGAAGTCCTTTTG
AATGCCAAACCCACCATTCATTGGTGCTGACTACATAGAATGGGGTTGAGAGAAGATCAGTTTG
GACTTCACATTTTTGTTTAAGCTTTAGGTCGTTTTTTTTTTTGTTTTGTTTTCGTTTGTTTTTG
TTTGTTTTTTCTTTTCTTTTTTTTTTAAGTTCTTGTGGGAAACTTTGGGATTAGTCAAAGGATG
GAGTCCTGTGGTAGACAAGAAGAGTAAATAGTTTTGATCCCTTCGGGGCCTGGAAAATGCACCC
AGGAAGCTTGTGAAAGAAGGTTCTGTGACAGTGAACACTTTCCACTTTCTGACACCTTATCCTG
CTGTATGTCTCCAGGATTTGGATTTTGATTTTTCAGATGTAGCTTGAAATTTCAATAAACTTTG
CTCTTTTTTTCAAAAAATCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001387911	(Get FASTA)	NCBI Sequence Viewer
	NP_001387912	(Get FASTA)	NCBI Sequence Viewer
	NP_112635	(Get FASTA)	NCBI Sequence Viewer
	XP_006234311	(Get FASTA)	NCBI Sequence Viewer
	XP_006234312	(Get FASTA)	NCBI Sequence Viewer
	XP_006234313	(Get FASTA)	NCBI Sequence Viewer
	XP_008771669	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61979	(Get FASTA)	NCBI Sequence Viewer
	BAB18679	(Get FASTA)	NCBI Sequence Viewer
	Q9EQZ1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_112635 ⟸ NM_031345
- UniProtKB:	Q9EQZ1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNTEMYQTPMEVAVYQLHNFSISFFSSLLGGDVVSVKLDNSASGASVVALDNKIEQAMDLVKNH LMYAVREEVEVLKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPEA PGGSAV hide sequence

RefSeq Acc Id:

XP_006234312 ⟸ XM_006234250

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAQPKIECRSPVGLDCCNCCLDLANRCDLQKGRSGENNPGSPTVSNFRQLQEKLVFENLNTDKL
NNIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVALDNKIEQAMDLVKN
HLMYAVREEVEVLKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPE
APGGSAV

hide sequence

RefSeq Acc Id:

XP_006234313 ⟸ XM_006234251

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAQPKIECRSPVGLDCCNCCLDLANRCDLQKGRSGENNPGSPTVSNFRQLQEKLVFENLNTDKL
NNIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVALDNKIEQAMDLVKN
HLMYAVREEVEVLKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPE
APGGSAV

hide sequence

RefSeq Acc Id:	XP_006234311 ⟸ XM_006234249
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZQF5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQPKIECRSPVGLDCCNCCLDLANRCDLQKGRSGENNPGSPTVSNFRQLQEKLVFENLNTDKL NNIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVALDNKIEQAMDLVKN HLMYAVREEVEVLKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPE APGGSAV hide sequence

RefSeq Acc Id:	XP_008771669 ⟸ XM_008773447
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZQF5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQPKIECRSPVGLDCCNCCLDLANRCDLQKGRSGENNPGSPTVSNFRQLQEKLVFENLNTDKL NNIMRQDSLEPVLRDPCYLINEGICNRNIDQTMLSILLFFHSASGASVVALDNKIEQAMDLVKN HLMYAVREEVEVLKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSRLSPEEPAPEAPETPE APGGSAV hide sequence

RefSeq Acc Id:

ENSRNOP00000072713 ⟸ ENSRNOT00000085118

RefSeq Acc Id:

ENSRNOP00000080328 ⟸ ENSRNOT00000117710

RefSeq Acc Id:

ENSRNOP00000081403 ⟸ ENSRNOT00000108889

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9EQZ1-F1-model_v2	AlphaFold	Q9EQZ1	1-134	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701957

Promoter ID:

EPDNEW_R12481

Type:

single initiation site

Name:

Tsc22d3_1

Description:

TSC22 domain family, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	111,887,920 - 111,887,980	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621654	AgrOrtholog
BioCyc Gene	G2FUF-1542	BioCyc
Ensembl Genes	ENSRNOG00000056135	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000072713	ENTREZGENE
	ENSRNOP00000072713.1	UniProtKB/Swiss-Prot
	ENSRNOP00000080328	ENTREZGENE
	ENSRNOP00000080328.1	UniProtKB/TrEMBL
	ENSRNOP00000081403.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085118	ENTREZGENE
	ENSRNOT00000085118.2	UniProtKB/Swiss-Prot
	ENSRNOT00000108889.1	UniProtKB/TrEMBL
	ENSRNOT00000117710	ENTREZGENE
	ENSRNOT00000117710.1	UniProtKB/TrEMBL
Gene3D-CATH	Single helix bin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5598145	IMAGE-MGC_LOAD
InterPro	TSC-22_Dip_Bun	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:83514	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72405	IMAGE-MGC_LOAD
NCBI Gene	83514	ENTREZGENE
PANTHER	TSC22	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TSC22 DOMAIN FAMILY PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TSC22	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tsc22d3	PhenoGen
PROSITE	TSC22	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Delta-sleep-inducing peptide immunoreactive peptide	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZQF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZSV8_RAT	UniProtKB/TrEMBL
	Q9EQZ1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Tsc22d3	TSC22 domain family, member 3	Tsc22d3	TSC22 domain family 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Tsc22d3	TSC22 domain family 3	Dsipi	delta sleep inducing peptide, immunoreactor	Symbol and Name updated	1299863	APPROVED
2004-12-14	Dsipi	delta sleep inducing peptide, immunoreactor	Gilz	glucocorticoid-induced leucine zipper	Symbol and Name updated	1299863	APPROVED
2002-08-07	Gilz	glucocorticoid-induced leucine zipper			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	mRNA induced by aldosterone	632721

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD