Gpc4 (glypican 4) - Rat Genome Database

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Gene: Gpc4 (glypican 4) Rattus norvegicus
Analyze
Symbol: Gpc4
Name: glypican 4
RGD ID: 1359399
Description: Involved in regulation of neurotransmitter receptor localization to postsynaptic specialization membrane and regulation of presynapse assembly. Is active in glutamatergic synapse and presynaptic membrane. Human ortholog(s) of this gene implicated in Keipert syndrome. Orthologous to human GPC4 (glypican 4); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glypican-4; LOC317322; similar to glypican 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X136,565,536 - 136,676,142 (-)NCBIGRCr8
mRatBN7.2X131,644,711 - 131,755,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX131,644,704 - 131,755,284 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX133,806,780 - 133,916,420 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X137,388,731 - 137,498,370 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X134,957,297 - 135,066,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X139,354,325 - 139,464,876 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX139,354,155 - 139,464,798 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X139,402,208 - 139,512,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X138,966,579 - 139,077,074 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X139,040,011 - 139,150,507 (-)NCBI
CeleraX130,559,646 - 130,670,213 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Astrocyte glypicans 4 and 6 promote formation of excitatory synapses via GluA1 AMPA receptors. Allen NJ, etal., Nature. 2012 May 27;486(7403):410-4. doi: 10.1038/nature11059.
2. Unbiased discovery of glypican as a receptor for LRRTM4 in regulating excitatory synapse development. de Wit J, etal., Neuron. 2013 Aug 21;79(4):696-711. doi: 10.1016/j.neuron.2013.06.049. Epub 2013 Aug 1.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Glypican-4 is an FGF2-binding heparan sulfate proteoglycan expressed in neural precursor cells. Hagihara K, etal., Dev Dyn 2000 Nov;219(3):353-67.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Dally-like core protein and its mammalian homologues mediate stimulatory and inhibitory effects on Hedgehog signal response. Williams EH, etal., Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):5869-74. Epub 2010 Mar 15.
Additional References at PubMed
PMID:10585884   PMID:16452087   PMID:19199708   PMID:21630459   PMID:23376485   PMID:24006456   PMID:25624497   PMID:25931508   PMID:27425250   PMID:29276006  


Genomics

Comparative Map Data
Gpc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X136,565,536 - 136,676,142 (-)NCBIGRCr8
mRatBN7.2X131,644,711 - 131,755,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX131,644,704 - 131,755,284 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX133,806,780 - 133,916,420 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X137,388,731 - 137,498,370 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X134,957,297 - 135,066,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X139,354,325 - 139,464,876 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX139,354,155 - 139,464,798 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X139,402,208 - 139,512,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X138,966,579 - 139,077,074 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X139,040,011 - 139,150,507 (-)NCBI
CeleraX130,559,646 - 130,670,213 (-)NCBICelera
Cytogenetic MapXq36NCBI
GPC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X133,300,103 - 133,415,489 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX133,300,103 - 133,415,489 (-)EnsemblGRCh38hg38GRCh38
GRCh37X132,434,131 - 132,549,517 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X132,262,730 - 132,376,871 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X132,160,583 - 132,274,725NCBI
CeleraX132,821,529 - 132,935,634 (-)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX121,838,234 - 121,950,367 (-)NCBIHuRef
CHM1_1X132,346,513 - 132,460,631 (-)NCBICHM1_1
T2T-CHM13v2.0X131,624,867 - 131,740,250 (-)NCBIT2T-CHM13v2.0
Gpc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X51,139,884 - 51,253,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX51,141,898 - 51,254,129 (-)EnsemblGRCm39 Ensembl
GRCm38X52,051,007 - 52,164,923 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX52,053,021 - 52,165,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X49,406,195 - 49,518,100 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X48,297,547 - 48,409,879 (-)NCBIMGSCv36mm8
CeleraX39,465,872 - 39,577,854 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX28.33NCBI
Gpc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554731,546,326 - 1,655,822 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554731,546,615 - 1,655,822 (+)NCBIChiLan1.0ChiLan1.0
GPC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X132,726,378 - 132,840,920 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X132,729,491 - 132,844,300 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X122,441,290 - 122,555,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X132,746,525 - 132,860,422 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX132,746,519 - 132,860,420 (-)Ensemblpanpan1.1panPan2
GPC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X104,098,316 - 104,215,883 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX104,100,571 - 104,216,103 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX90,208,572 - 90,326,089 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X105,957,616 - 106,075,266 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX105,957,991 - 106,074,114 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X103,371,062 - 103,488,678 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X105,240,314 - 105,354,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X105,019,896 - 105,137,230 (-)NCBIUU_Cfam_GSD_1.0
Gpc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X102,280,494 - 102,392,469 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366911,564,833 - 1,677,482 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366911,564,872 - 1,676,378 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX109,306,368 - 109,421,785 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X109,306,489 - 109,421,947 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X125,341,052 - 125,453,788 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X108,451,082 - 108,570,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX108,450,536 - 108,570,214 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606545,975,745 - 46,092,848 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479713,002,646 - 13,116,180 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479713,005,310 - 13,116,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpc4
428 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:189
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000003282
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

Markers in Region
AI071251  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,644,949 - 131,645,169 (+)MAPPERmRatBN7.2
Rnor_6.0X139,354,573 - 139,354,792NCBIRnor6.0
Rnor_5.0X139,402,456 - 139,402,675UniSTSRnor5.0
RGSC_v3.4X138,966,773 - 138,966,992UniSTSRGSC3.4
CeleraX130,559,840 - 130,560,059UniSTS
RH 3.4 MapX945.91UniSTS
Cytogenetic MapXq36UniSTS
X83577  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,644,812 - 131,644,969 (+)MAPPERmRatBN7.2
Rnor_6.0X139,354,436 - 139,354,592NCBIRnor6.0
Rnor_5.0X139,402,319 - 139,402,475UniSTSRnor5.0
RGSC_v3.4X138,966,636 - 138,966,792UniSTSRGSC3.4
CeleraX130,559,703 - 130,559,859UniSTS
Cytogenetic MapXq36UniSTS
RH143854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,644,860 - 131,645,003 (+)MAPPERmRatBN7.2
Rnor_6.0X139,354,484 - 139,354,626NCBIRnor6.0
Rnor_5.0X139,402,367 - 139,402,509UniSTSRnor5.0
RGSC_v3.4X138,966,684 - 138,966,826UniSTSRGSC3.4
CeleraX130,559,751 - 130,559,893UniSTS
RH 3.4 MapX949.12UniSTS
Cytogenetic MapXq36UniSTS
AU048085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,657,635 - 131,657,814 (+)MAPPERmRatBN7.2
Rnor_6.0X139,367,258 - 139,367,436NCBIRnor6.0
Rnor_5.0X139,415,141 - 139,415,319UniSTSRnor5.0
RGSC_v3.4X138,979,458 - 138,979,636UniSTSRGSC3.4
CeleraX130,572,525 - 130,572,703UniSTS
Cytogenetic MapXq36UniSTS
UniSTS:471081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,644,798 - 131,645,413 (+)MAPPERmRatBN7.2
Rnor_6.0X139,354,422 - 139,355,036NCBIRnor6.0
Rnor_5.0X139,402,305 - 139,402,919UniSTSRnor5.0
RGSC_v3.4X138,966,622 - 138,967,236UniSTSRGSC3.4
CeleraX130,559,689 - 130,560,303UniSTS
Cytogenetic MapXq36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 13 138 173 123 7 123 36 45 208 115 145 45 24
Low 3 42 18 54 18 42
Below cutoff

Sequence


Ensembl Acc Id: ENSRNOT00000003282   ⟹   ENSRNOP00000003282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX131,644,704 - 131,755,284 (-)Ensembl
Rnor_6.0 EnsemblX139,354,155 - 139,464,798 (-)Ensembl
RefSeq Acc Id: NM_001014108   ⟹   NP_001014130
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X136,565,590 - 136,676,057 (-)NCBI
mRatBN7.2X131,644,756 - 131,755,263 (-)NCBI
Rnor_6.0X139,354,379 - 139,464,833 (-)NCBI
Rnor_5.0X139,402,208 - 139,512,761 (-)NCBI
RGSC_v3.4X138,966,579 - 139,077,074 (-)RGD
CeleraX130,559,646 - 130,670,213 (-)RGD
Sequence:
RefSeq Acc Id: XM_006257580   ⟹   XP_006257642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X136,565,536 - 136,676,142 (-)NCBI
mRatBN7.2X131,644,711 - 131,755,349 (-)NCBI
Rnor_6.0X139,354,325 - 139,464,876 (-)NCBI
Rnor_5.0X139,402,208 - 139,512,761 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001014130 (Get FASTA)   NCBI Sequence Viewer  
  XP_006257642 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81962 (Get FASTA)   NCBI Sequence Viewer  
  EDM10951 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003282.4
RefSeq Acc Id: NP_001014130   ⟸   NM_001014108
- Peptide Label: precursor
- UniProtKB: Q642B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257642   ⟸   XM_006257580
- Peptide Label: isoform X1
- UniProtKB: Q642B0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003282   ⟸   ENSRNOT00000003282

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q642B0-F1-model_v2 AlphaFold Q642B0 1-557 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702020
Promoter ID:EPDNEW_R12543
Type:initiation region
Name:Gpc4_1
Description:glypican 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X139,464,850 - 139,464,910EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359399 AgrOrtholog
BioCyc Gene G2FUF-1037 BioCyc
Ensembl Genes ENSRNOG00000002413 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003282.6 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7124728 IMAGE-MGC_LOAD
InterPro Glypican UniProtKB/TrEMBL
  Glypican_CS UniProtKB/TrEMBL
KEGG Report rno:317322 UniProtKB/TrEMBL
MGC_CLONE MGC:94087 IMAGE-MGC_LOAD
NCBI Gene 317322 ENTREZGENE
PANTHER Glypican UniProtKB/TrEMBL
  PTHR10822:SF25 UniProtKB/TrEMBL
Pfam Glypican UniProtKB/TrEMBL
PhenoGen Gpc4 PhenoGen
PROSITE GLYPICAN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002413 RatGTEx
UniProt A6JMT9_RAT UniProtKB/TrEMBL
  Q642B0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Gpc4  glypican 4  LOC317322  similar to glypican 4  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC317322  similar to glypican 4      Symbol and Name status set to provisional 70820 PROVISIONAL