AA892682 Marker Search Result - Rat Genome Database

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Marker: AA892682

Symbol: AA892682
Previously known as:
RGD ID: 5083942
Expected Size: 128 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X68,570,516 - 68,570,644 (+)MAPPERmRatBN7.2
Rnor_6.0X74,422,442 - 74,422,569NCBIRnor6.0
Rnor_5.0X75,224,375 - 75,224,502UniSTSRnor5.0
RGSC_v3.4X91,541,311 - 91,541,438UniSTSRGSC3.4
CeleraX69,936,085 - 69,936,212UniSTS
Cytogenetic MapXq31UniSTS
Is Marker For: Genes:   Ftx  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CCACAGAGTAAGAAACAGGGCA
Reverse Primer GACCCAGAATAAAGCTTGGTGG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7726681JpxJPX transcript, XIST activatorX6851149168665132Rat

Nucleotide Sequences
GenBank Nucleotide CH473969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 302873 UniSTS
UniSTS 250053 UniSTS