Il1rapl2 (interleukin 1 receptor accessory protein-like 2) - Rat Genome Database

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Gene: Il1rapl2 (interleukin 1 receptor accessory protein-like 2) Rattus norvegicus
Analyze
Symbol: Il1rapl2
Name: interleukin 1 receptor accessory protein-like 2
RGD ID: 1561761
Description: Predicted to have interleukin-1, type II, blocking receptor activity. Predicted to be involved in regulation of presynapse assembly. Predicted to localize to glutamatergic synapse. Orthologous to human IL1RAPL2 (interleukin 1 receptor accessory protein like 2); INTERACTS WITH bisphenol A; 2,3',4,4',5-Pentachlorobiphenyl (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Also known as: LOC300913; RGD1561761; similar to TIGIRR-1; X-linked interleukin-1 receptor accessory protein-like 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X100,961,509 - 102,271,753 (+)NCBI
Rnor_6.0 EnsemblX108,287,068 - 109,851,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X108,287,034 - 109,851,075 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X108,150,787 - 108,254,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X108,785,045 - 109,131,750 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X109,679,033 - 109,708,181 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X125,013,154 - 126,352,850 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX101,764,259 - 103,062,805 (+)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:15632090   PMID:21926414  


Genomics

Comparative Map Data
Il1rapl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X100,961,509 - 102,271,753 (+)NCBI
Rnor_6.0 EnsemblX108,287,068 - 109,851,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X108,287,034 - 109,851,075 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X108,150,787 - 108,254,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X108,785,045 - 109,131,750 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0X109,679,033 - 109,708,181 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X125,013,154 - 126,352,850 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX101,764,259 - 103,062,805 (+)NCBICelera
Cytogenetic MapXq32NCBI
IL1RAPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX104,566,199 - 105,767,829 (+)EnsemblGRCh38hg38GRCh38
GRCh38X104,566,199 - 105,769,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X103,810,880 - 105,011,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X103,697,652 - 104,898,478 (+)NCBINCBI36hg18NCBI36
Build 34X103,617,140 - 104,817,967NCBI
CeleraX104,285,598 - 105,486,376 (+)NCBI
Cytogenetic MapXq22.3NCBI
HuRefX93,435,071 - 94,637,503 (+)NCBIHuRef
CHM1_1X103,721,823 - 104,923,126 (+)NCBICHM1_1
Il1rapl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X136,471,503 - 137,749,826 (+)NCBIGRCm39mm39
GRCm39 EnsemblX136,471,357 - 137,747,695 (+)Ensembl
GRCm38X137,570,754 - 138,849,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX137,570,608 - 138,846,946 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X134,106,088 - 135,381,494 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X132,917,913 - 134,193,319 (+)NCBImm8
CeleraX120,847,137 - 122,116,600 (+)NCBICelera
Cytogenetic MapXF1NCBI
Il1rapl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555481,518,695 - 2,623,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555481,462,746 - 2,623,622 (+)NCBIChiLan1.0ChiLan1.0
IL1RAPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X104,068,596 - 105,283,662 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX104,161,023 - 105,283,494 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X93,689,575 - 94,904,887 (+)NCBIMhudiblu_PPA_v0panPan3
IL1RAPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,918,264 - 78,959,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX64,099,554 - 65,432,679 (+)NCBI
ROS_Cfam_1.0X79,587,004 - 80,920,111 (+)NCBI
UMICH_Zoey_3.1X77,071,569 - 78,402,563 (+)NCBI
UNSW_CanFamBas_1.0X78,775,315 - 80,098,087 (+)NCBI
UU_Cfam_GSD_1.0X79,222,860 - 79,875,803 (+)NCBI
Il1rapl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,812,504 - 78,870,601 (+)NCBI
SpeTri2.0NW_0049364998,788,093 - 9,048,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL1RAPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX85,428,324 - 86,466,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X85,347,867 - 86,464,670 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X100,533,436 - 100,826,715 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232439
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X92,433,337 - 93,646,131 (+)NCBI
Il1rapl2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480310,917,671 - 12,315,002 (-)NCBI

Position Markers
DXGot100  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X108,816,216 - 108,816,403NCBIRnor6.0
Rnor_5.0X108,677,912 - 108,678,099UniSTSRnor5.0
RGSC_v3.4X125,548,486 - 125,548,673UniSTSRGSC3.4
CeleraX102,279,261 - 102,279,448UniSTS
Cytogenetic MapXq35UniSTS
DXGot130  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X108,343,883 - 108,344,032NCBIRnor6.0
Rnor_5.0X108,207,636 - 108,207,785UniSTSRnor5.0
RGSC_v3.4X125,069,811 - 125,069,960UniSTSRGSC3.4
CeleraX101,820,860 - 101,821,009UniSTS
Cytogenetic MapXq35UniSTS
AU047308  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X108,866,761 - 108,866,940NCBIRnor6.0
Rnor_5.0X108,728,457 - 108,728,636UniSTSRnor5.0
RGSC_v3.4X125,599,182 - 125,599,361UniSTSRGSC3.4
CeleraX102,330,455 - 102,330,634UniSTS
Cytogenetic MapXq35UniSTS
RH138132  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X108,605,192 - 108,605,378NCBIRnor6.0
Rnor_5.0X108,468,362 - 108,468,548UniSTSRnor5.0
RGSC_v3.4X125,342,880 - 125,343,066UniSTSRGSC3.4
CeleraX102,081,958 - 102,082,144UniSTS
Cytogenetic MapXq35UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X15688119127888215Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X44320616158345622Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX44557974120045269Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X70352120127888215Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X82930791127930791Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X101333032146333032Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX107886746152409805Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:57
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000040816
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hepatobiliary system nervous system renal system reproductive system
High
Medium
Low 35 4 4
Below cutoff 4 4 4 22 16 20

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000093348   ⟹   ENSRNOP00000076241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX108,287,068 - 109,851,047 (+)Ensembl
RefSeq Acc Id: NM_001166342   ⟹   NP_001159814
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X100,961,509 - 102,271,753 (+)NCBI
Rnor_6.0X108,287,034 - 109,851,075 (+)NCBI
Rnor_5.0X108,150,787 - 108,254,866 (+)NCBI
Rnor_5.0X108,785,045 - 109,131,750 (+)NCBI
Rnor_5.0X109,679,033 - 109,708,181 (+)NCBI
RGSC_v3.4X125,013,154 - 126,352,850 (+)RGD
CeleraX101,764,259 - 103,062,805 (+)RGD
Sequence:
RefSeq Acc Id: XM_017601959   ⟹   XP_017457448
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X108,533,771 - 109,851,075 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001159814 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88006 (Get FASTA)   NCBI Sequence Viewer  
  EDL88007 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001159814   ⟸   NM_001166342
- Peptide Label: precursor
- UniProtKB: A0A1W2Q6G2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457448   ⟸   XM_017601959
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000076241   ⟸   ENSRNOT00000093348
Protein Domains
Ig-like   TIR

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561761 AgrOrtholog
Ensembl Genes ENSRNOG00000062221 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000076241 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000093348 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_6 UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/TrEMBL
  IL-1_rcpt_II-typ UniProtKB/TrEMBL
  TIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
KEGG Report rno:300913 UniProtKB/TrEMBL
NCBI Gene 300913 ENTREZGENE
PANTHER PTHR11890 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  Ig_6 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
PhenoGen Il1rapl2 PhenoGen
PRINTS INTRLEUKN1R2 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF52200 UniProtKB/TrEMBL
UniProt A0A1W2Q6G2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Il1rapl2  interleukin 1 receptor accessory protein-like 2   Il1rapl2_predicted  interleukin 1 receptor accessory protein-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Il1rapl2_predicted  interleukin 1 receptor accessory protein-like 2 (predicted)  RGD1561761_predicted  similar to TIGIRR-1 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1561761_predicted  similar to TIGIRR-1 (predicted)  LOC300913  similar to TIGIRR-1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC300913  similar to TIGIRR-1      Symbol and Name status set to provisional 70820 PROVISIONAL