Atp11c (ATPase phospholipid transporting 11C) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Atp11c (ATPase phospholipid transporting 11C) Rattus norvegicus
Analyze
Symbol: Atp11c
Name: ATPase phospholipid transporting 11C
RGD ID: 1564481
Description: Predicted to enable phosphatidylethanolamine flippase activity and phosphatidylserine flippase activity. Predicted to be involved in phospholipid translocation; positive regulation of B cell differentiation; and pre-B cell differentiation. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in endoplasmic reticulum; plasma membrane; and recycling endosome. Human ortholog(s) of this gene implicated in X-linked congenital hemolytic anemia. Orthologous to human ATP11C (ATPase phospholipid transporting 11C); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Atp11c-ps1; ATPase, class VI, type 11C; ATPase, class VI, type 11C, pseudogene 1; LOC317599; phospholipid-transporting ATPase IG; RGD1564481; similar to ATPase, Class VI, type 11C isoform a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X143,600,763 - 143,788,407 (-)NCBIGRCr8
mRatBN7.2X138,564,459 - 138,752,116 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX138,565,836 - 138,751,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X143,340,712 - 143,525,588 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX143,346,252 - 143,453,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X143,369,601 - 143,554,166 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X145,746,536 - 145,861,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX134,637,343 - 134,750,541 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (ISO)
amiodarone  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP)
buspirone  (EXP)
butanal  (ISO)
cadmium dichloride  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
deguelin  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
fipronil  (EXP)
flutamide  (EXP)
FR900359  (ISO)
geldanamycin  (ISO)
glafenine  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17897319   PMID:21423173   PMID:21914794  


Genomics

Comparative Map Data
Atp11c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X143,600,763 - 143,788,407 (-)NCBIGRCr8
mRatBN7.2X138,564,459 - 138,752,116 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX138,565,836 - 138,751,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X143,340,712 - 143,525,588 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX143,346,252 - 143,453,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X143,369,601 - 143,554,166 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X145,746,536 - 145,861,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX134,637,343 - 134,750,541 (-)NCBICelera
Cytogenetic MapXq36NCBI
ATP11C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X139,726,348 - 139,936,903 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX139,726,346 - 139,945,276 (-)EnsemblGRCh38hg38GRCh38
GRCh37X138,808,507 - 139,015,212 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X138,636,171 - 138,742,113 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X138,534,025 - 138,639,967NCBI
CeleraX139,175,990 - 139,281,918 (-)NCBICelera
Cytogenetic MapXq27.1NCBI
HuRefX128,075,584 - 128,181,035 (-)NCBIHuRef
CHM1_1X138,719,392 - 138,825,335 (-)NCBICHM1_1
T2T-CHM13v2.0X138,038,281 - 138,248,842 (-)NCBIT2T-CHM13v2.0
Atp11c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X59,268,643 - 59,450,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX59,268,650 - 59,636,304 (-)EnsemblGRCm39 Ensembl
GRCm38X60,223,283 - 60,404,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX60,223,290 - 60,592,698 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X57,476,467 - 57,657,156 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X56,570,074 - 56,750,596 (-)NCBIMGSCv36mm8
CeleraX46,662,339 - 46,843,830 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX33.5NCBI
Atp11c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554895,394,357 - 5,567,405 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554895,394,553 - 5,567,295 (+)NCBIChiLan1.0ChiLan1.0
ATP11C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X139,177,627 - 139,383,539 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X139,181,233 - 139,387,134 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X128,880,747 - 129,085,989 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X139,130,224 - 139,335,751 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX139,132,783 - 139,334,869 (-)Ensemblpanpan1.1panPan2
ATP11C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X109,695,018 - 109,888,284 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX109,697,086 - 109,880,624 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX95,522,302 - 95,715,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X111,683,119 - 111,876,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX111,683,117 - 111,876,801 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X108,815,452 - 109,008,656 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X110,999,978 - 111,193,126 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X110,679,492 - 110,872,773 (-)NCBIUU_Cfam_GSD_1.0
Atp11c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X107,724,870 - 107,913,827 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365137,701,725 - 7,889,750 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365137,701,733 - 7,889,753 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP11C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX114,394,438 - 114,574,916 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X114,394,436 - 114,575,658 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X130,614,130 - 130,659,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP11C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X114,812,948 - 115,013,557 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX114,812,930 - 115,013,538 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606552,545,066 - 52,747,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp11c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248086,778,794 - 6,952,785 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248086,778,792 - 6,955,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp11c
436 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1548
Count of miRNA genes:347
Interacting mature miRNAs:503
Transcripts:ENSRNOT00000049120, ENSRNOT00000051319
Prediction methods:Microtar, Miranda, Pita
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

Markers in Region
px-51b11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X138,630,083 - 138,630,187 (+)MAPPERmRatBN7.2
Rnor_6.0X143,406,721 - 143,406,824NCBIRnor6.0
Rnor_5.0X143,435,674 - 143,435,777UniSTSRnor5.0
RGSC_v3.4X145,811,379 - 145,811,482UniSTSRGSC3.4
CeleraX134,702,830 - 134,702,933UniSTS
Cytogenetic MapXq36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ209772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000051319   ⟹   ENSRNOP00000048676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX138,566,765 - 138,751,204 (-)Ensembl
Rnor_6.0 EnsemblX143,346,252 - 143,453,612 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098851   ⟹   ENSRNOP00000092019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX138,566,765 - 138,751,204 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099292   ⟹   ENSRNOP00000083253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX138,565,836 - 138,751,204 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107692   ⟹   ENSRNOP00000097091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX138,565,836 - 138,678,841 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109683   ⟹   ENSRNOP00000093385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX138,565,836 - 138,751,204 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116612   ⟹   ENSRNOP00000081652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX138,565,836 - 138,667,430 (-)Ensembl
RefSeq Acc Id: XM_006257597   ⟹   XP_006257659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,718,149 (-)NCBI
mRatBN7.2X138,564,459 - 138,680,292 (-)NCBI
Rnor_6.0X143,340,712 - 143,454,456 (-)NCBI
Rnor_5.0X143,369,601 - 143,554,166 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257599   ⟹   XP_006257661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,718,149 (-)NCBI
mRatBN7.2X138,564,459 - 138,680,292 (-)NCBI
Rnor_6.0X143,340,712 - 143,454,456 (-)NCBI
Rnor_5.0X143,369,601 - 143,554,166 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602409   ⟹   XP_017457898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,718,150 (-)NCBI
mRatBN7.2X138,564,459 - 138,681,851 (-)NCBI
Rnor_6.0X143,340,712 - 143,454,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602410   ⟹   XP_017457899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,718,150 (-)NCBI
mRatBN7.2X138,564,459 - 138,680,293 (-)NCBI
Rnor_6.0X143,340,712 - 143,454,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100443   ⟹   XP_038956371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,788,291 (-)NCBI
mRatBN7.2X138,569,995 - 138,752,000 (-)NCBI
RefSeq Acc Id: XM_039100444   ⟹   XP_038956372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,788,407 (-)NCBI
mRatBN7.2X138,569,995 - 138,752,116 (-)NCBI
RefSeq Acc Id: XM_039100445   ⟹   XP_038956373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,788,305 (-)NCBI
mRatBN7.2X138,569,995 - 138,752,004 (-)NCBI
RefSeq Acc Id: XM_039100446   ⟹   XP_038956374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,788,291 (-)NCBI
mRatBN7.2X138,569,995 - 138,752,000 (-)NCBI
RefSeq Acc Id: XM_039100447   ⟹   XP_038956375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,788,383 (-)NCBI
mRatBN7.2X138,569,995 - 138,752,063 (-)NCBI
RefSeq Acc Id: XM_039100448   ⟹   XP_038956376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,606,294 - 143,718,150 (-)NCBI
mRatBN7.2X138,569,992 - 138,681,851 (-)NCBI
RefSeq Acc Id: XM_039100449   ⟹   XP_038956377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,606,307 - 143,718,150 (-)NCBI
mRatBN7.2X138,569,993 - 138,680,293 (-)NCBI
RefSeq Acc Id: XM_063280570   ⟹   XP_063136640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X143,600,763 - 143,787,905 (-)NCBI
RefSeq Acc Id: XP_006257661   ⟸   XM_006257599
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AUH5 (UniProtKB/TrEMBL),   A0A8I5ZVG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257659   ⟸   XM_006257597
- Peptide Label: isoform X4
- UniProtKB: D3ZFC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457898   ⟸   XM_017602409
- Peptide Label: isoform X3
- UniProtKB: D3ZFC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457899   ⟸   XM_017602410
- Peptide Label: isoform X6
- UniProtKB: D3ZFC5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000048676   ⟸   ENSRNOT00000051319
RefSeq Acc Id: XP_038956376   ⟸   XM_039100448
- Peptide Label: isoform X3
- UniProtKB: D3ZFC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956377   ⟸   XM_039100449
- Peptide Label: isoform X6
- UniProtKB: D3ZFC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956372   ⟸   XM_039100444
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZV31 (UniProtKB/TrEMBL),   A0A8I5ZVG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956375   ⟸   XM_039100447
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZV31 (UniProtKB/TrEMBL),   A0A8I5ZVG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956373   ⟸   XM_039100445
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZV31 (UniProtKB/TrEMBL),   A0A8I5ZVG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956374   ⟸   XM_039100446
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZV31 (UniProtKB/TrEMBL),   A0A8I5ZVG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956371   ⟸   XM_039100443
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZV31 (UniProtKB/TrEMBL),   A0A8I5ZVG5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093385   ⟸   ENSRNOT00000109683
Ensembl Acc Id: ENSRNOP00000083253   ⟸   ENSRNOT00000099292
Ensembl Acc Id: ENSRNOP00000097091   ⟸   ENSRNOT00000107692
Ensembl Acc Id: ENSRNOP00000092019   ⟸   ENSRNOT00000098851
Ensembl Acc Id: ENSRNOP00000081652   ⟸   ENSRNOT00000116612
RefSeq Acc Id: XP_063136640   ⟸   XM_063280570
- Peptide Label: isoform X5
Protein Domains
P-type ATPase C-terminal   P-type ATPase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFC5-F1-model_v2 AlphaFold D3ZFC5 1-1130 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564481 AgrOrtholog
BioCyc Gene G2FUF-878 BioCyc
Ensembl Genes ENSRNOG00000003472 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051319.6 UniProtKB/TrEMBL
  ENSRNOT00000098851 ENTREZGENE
  ENSRNOT00000098851.1 UniProtKB/TrEMBL
  ENSRNOT00000099292.1 UniProtKB/TrEMBL
  ENSRNOT00000107692 ENTREZGENE
  ENSRNOT00000107692.1 UniProtKB/TrEMBL
  ENSRNOT00000109683 ENTREZGENE
  ENSRNOT00000109683.1 UniProtKB/TrEMBL
  ENSRNOT00000116612 ENTREZGENE
  ENSRNOT00000116612.1 UniProtKB/TrEMBL
  ENSRNOT00000137722 ENTREZGENE
  ENSRNOT00000151260 ENTREZGENE
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
InterPro ATPase_P-typ_ATPase-assoc-dom UniProtKB/TrEMBL
  ATPase_P-typ_cyto_domN UniProtKB/TrEMBL
  ATPase_P-typ_ion-transptr UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_Plipid-transl UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene 317599 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR24092:SF38 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PhenoGen Atp11c PhenoGen
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003472 RatGTEx
Superfamily-SCOP ATPase_cation_domN UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8I5ZV31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFP3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKS8_RAT UniProtKB/TrEMBL
  A0A8I6AUH5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFC5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp11c  ATPase phospholipid transporting 11C  Atp11c  ATPase, class VI, type 11C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-09-04 Atp11c  ATPase, class VI, type 11C  Atp11c-ps1  ATPase, class VI, type 11C, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Atp11c-ps1  ATPase, class VI, type 11C, pseudogene 1  Atp11c  ATPase, class VI, type 11C, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-02-24 Atp11c  ATPase, class VI, type 11C, pseudogene 1  Atp11c-ps1  Atpase, class VI, type 11C, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-01-26 Atp11c-ps1  Atpase, class VI, type 11C, pseudogene 1  Atp11c  Atpase, class VI, type 11C   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Atp11c  Atpase, class VI, type 11C   Atp11c_predicted  Atpase, class VI, type 11C (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Atp11c_predicted  Atpase, class VI, type 11C (predicted)  RGD1564481_predicted  similar to ATPase, Class VI, type 11C isoform a (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1564481_predicted  similar to ATPase, Class VI, type 11C isoform a (predicted)  LOC317599  similar to ATPase, Class VI, type 11C isoform a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317599  similar to ATPase, Class VI, type 11C isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL