LOC120099513 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099513 (U2 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099513
Name: U2 spliceosomal RNA
RGD ID: 41006369
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U2
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X74,941,246 - 74,941,430 (+)NCBIGRCr8
mRatBN7.2X70,875,679 - 70,875,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX70,875,679 - 70,875,863 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX76,844,949 - 76,845,133 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120099513
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X74,941,246 - 74,941,430 (+)NCBIGRCr8
mRatBN7.2X70,875,679 - 70,875,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX70,875,679 - 70,875,863 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX76,844,949 - 76,845,133 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq22NCBI
RNU2-3P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381595,745,804 - 95,745,991 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1595,745,804 - 95,745,994 (+)EnsemblGRCh38hg38GRCh38
GRCh371596,289,033 - 96,289,220 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1572,705,225 - 72,705,490 (+)NCBICelera
Cytogenetic Map15q26.2NCBI
HuRef1572,419,563 - 72,419,828 (+)NCBIHuRef
CHM1_11596,130,354 - 96,130,541 (+)NCBICHM1_1
T2T-CHM13v2.01593,510,420 - 93,510,607 (+)NCBIT2T-CHM13v2.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX70,875,679 - 70,875,863 (+)Ensembl
RefSeq Acc Id: XR_005498674
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X74,941,246 - 74,941,430 (+)NCBI
mRatBN7.2X70,875,679 - 70,875,863 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1930 BioCyc
Ensembl Genes ENSRNOG00000055256 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082249 ENTREZGENE
NCBI Gene LOC120099513 ENTREZGENE
PhenoGen LOC120099513 PhenoGen
RatGTEx ENSRNOG00000055256 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099513  U2 spliceosomal RNA  U2  U2 spliceosomal RNA  Data merged from RGD:15009323 737654 PROVISIONAL
2021-01-26 LOC120099513  U2 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U2  U2 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL