Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: LOC100361016 (oocyte specific homeobox 5-like) Rattus norvegicus
Analyze
Symbol: LOC100361016
Name: oocyte specific homeobox 5-like
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human VENTX (VENT homeobox); INTERACTS WITH belinostat (ortholog); benzene (ortholog); benzo[e]pyrene (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein ceh-37-like
Orthologs:
Homo sapiens (human) : VENTX (VENT homeobox)  HGNC  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ventx (VENT homeobox)
Pan paniscus (bonobo/pygmy chimpanzee) : VENTX (VENT homeobox)
Canis lupus familiaris (dog) : VENTX (VENT homeobox)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ventx (VENT homeobox)
Sus scrofa (pig) : VENTX (VENT homeobox)
Chlorocebus sabaeus (African green monkey) : VENTX (VENT homeobox)
Heterocephalus glaber (naked mole-rat) : Ventx (VENT homeobox)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X93,064,417 - 93,067,181 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX93,064,686 - 93,065,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X92,964,258 - 92,966,244 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X110,278,093 - 110,284,738 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX87,622,250 - 87,623,796 (-)NCBICelera
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on LOC100361016
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2320944
Created: 2010-05-05
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.