Rpl39l2 (ribosomal protein L39 like 2) - Rat Genome Database

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Gene: Rpl39l2 (ribosomal protein L39 like 2) Rattus norvegicus
Analyze
Symbol: Rpl39l2 (Ensembl: LOC103690889)
Name: ribosomal protein L39 like 2 (Ensembl:60S ribosomal protein L39 pseudogene)
RGD ID: 9146728
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L39 pseudogene; 60S ribosomal protein L39-like; large ribosomal subunit protein eL39-like; LOC103690889
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X110,843,171 - 110,843,353 (-)NCBIGRCr8
mRatBN7.2X106,046,331 - 106,046,530 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX106,046,348 - 106,046,503 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X113,699,593 - 113,699,764 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
CeleraX105,460,415 - 105,460,586 (-)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039100594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000064521   ⟹   ENSRNOP00000059662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX106,046,348 - 106,046,503 (-)Ensembl
RefSeq Acc Id: XM_039100594   ⟹   XP_038956522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X110,843,171 - 110,843,353 (-)NCBI
mRatBN7.2X106,046,331 - 106,046,530 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956522 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059662
  ENSRNOP00000059662.3
Reference Protein Sequences
RefSeq Acc Id: XP_038956522   ⟸   XM_039100594
- UniProtKB: A0A0H2UI11 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000059662   ⟸   ENSRNOT00000064521

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1514 BioCyc
Ensembl Genes ENSRNOG00000066509 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064521.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1620.10 UniProtKB/TrEMBL
InterPro Ribosomal_L39 UniProtKB/TrEMBL
  Ribosomal_L39_CS UniProtKB/TrEMBL
  Ribosomal_L39e_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103690889 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L39-LIKE UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L39E UniProtKB/TrEMBL
Pfam Ribosomal_L39 UniProtKB/TrEMBL
PhenoGen Rpl39l2 PhenoGen
PROSITE RIBOSOMAL_L39E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000066509 RatGTEx
Superfamily-SCOP SSF48662 UniProtKB/TrEMBL
UniProt A0A0H2UI11 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl39l2  ribosomal protein L39 like 2  LOC103690889  60S ribosomal protein L39 pseudogene  Symbol and Name Changed 1299863 APPROVED
2014-08-25 LOC103690889  60S ribosomal protein L39 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL