LOC120099524 (small nucleolar RNA SNORA11) - Rat Genome Database

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Pathways
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Gene: LOC120099524 (small nucleolar RNA SNORA11) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120099524
Name: small nucleolar RNA SNORA11
RGD ID: 41219400
Description:
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X63,304,608 - 63,304,733 (+)NCBIGRCr8
mRatBN7.2X59,310,854 - 59,310,979 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX59,310,854 - 59,310,979 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000101225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX59,310,854 - 59,310,979 (+)Ensembl
RefSeq Acc Id: XR_005498685
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X63,304,608 - 63,304,733 (+)NCBI
mRatBN7.2X59,310,854 - 59,310,979 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2228 BioCyc
Ensembl Genes ENSRNOG00000063296 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000101225 ENTREZGENE
NCBI Gene LOC120099524 ENTREZGENE
PhenoGen LOC120099524 PhenoGen
RatGTEx ENSRNOG00000063296 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120099524  small nucleolar RNA SNORA11      Symbol and Name status set to provisional 70820 PROVISIONAL