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Gene: Col4a5 (collagen type IV alpha 5 chain) Rattus norvegicus
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Symbol: Col4a5
Name: collagen type IV alpha 5 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway; extracellular matrix organization; and neuromuscular junction development. Predicted to localize to the collagen type IV trimer; extracellular space; and neuromuscular junction. Human ortholog(s) of this gene implicated in Alport syndrome and X-linked Alport syndrome. Orthologous to human COL4A5 (collagen type IV alpha 5 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-5(IV) chain; collagen, type IV, alpha 5; LOC363457; procollagen, type IV, alpha 5; RGD1565499; similar to type IV collagen alpha 5 chain
Orthologs:
Homo sapiens (human) : COL4A5 (collagen type IV alpha 5 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col4a5 (collagen, type IV, alpha 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col4a5 (collagen type IV alpha 5 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL4A5 (collagen type IV alpha 5 chain)
Canis lupus familiaris (dog) : COL4A5 (collagen type IV alpha 5 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col4a5 (collagen type IV alpha 5 chain)
Sus scrofa (pig) : COL4A5 (collagen type IV alpha 5 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X112,769,595 - 112,983,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X111,226,503 - 111,437,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,918,697 - 37,130,659 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX104,529,279 - 104,731,865 (+)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col4a5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1565499
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.