Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: C1galt1c1 (C1GALT1-specific chaperone 1) Rattus norvegicus
Analyze
Symbol: C1galt1c1
Name: C1GALT1-specific chaperone 1
Description: Predicted to have glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; platelet activation; and platelet morphogenesis. Predicted to localize to the integral component of membrane. Human ortholog(s) of this gene implicated in Tn polyagglutination syndrome. Orthologous to human C1GALT1C1 (C1GALT1 specific chaperone 1); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 2; LOC302499; MGC124680; RGD1311230; similar to contains transmembrane (TM) region and ATP binding region
Orthologs:
Homo sapiens (human) : C1GALT1C1 (C1GALT1 specific chaperone 1)  HGNC  Alliance
Mus musculus (house mouse) : C1galt1c1 (C1GALT1-specific chaperone 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : C1galt1c1 (C1GALT1 specific chaperone 1)
Pan paniscus (bonobo/pygmy chimpanzee) : C1GALT1C1 (C1GALT1 specific chaperone 1)
Canis lupus familiaris (dog) : C1GALT1C1 (C1GALT1 specific chaperone 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : C1galt1c1 (C1GALT1 specific chaperone 1)
Sus scrofa (pig) : C1GALT1C1 (C1GALT1 specific chaperone 1)
more info ...
Related Pseudogenes: RGD1563725  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X124,921,686 - 124,926,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX124,921,728 - 124,926,171 (-)Ensembl
Rnor_5.0X125,006,181 - 125,010,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X6,744,670 - 6,749,116 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X6,750,225 - 6,754,604 (+)NCBI
CeleraX116,594,348 - 116,598,798 (-)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on C1galt1c1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311230
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.