Ct55 (cancer/testis antigen 55) - Rat Genome Database

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Gene: Ct55 (cancer/testis antigen 55) Rattus norvegicus
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Symbol: Ct55
Name: cancer/testis antigen 55
RGD ID: 1560456
Description: Predicted to be involved in spermatogenesis. Predicted to be located in acrosomal vesicle and sperm flagellum. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CT55 (cancer/testis antigen 55); INTERACTS WITH aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog); bisphenol A (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC317310; RGD1560456; similar to chromosome X open reading frame 48
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X138,525,325 - 138,538,521 (+)NCBIGRCr8
mRatBN7.2X133,502,545 - 133,515,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX133,502,869 - 133,515,529 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X73,512,835 - 73,525,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX73,513,028 - 73,525,650 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X74,325,549 - 74,346,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,029,710 - 141,042,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX68,801,015 - 68,813,750 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Ct55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X138,525,325 - 138,538,521 (+)NCBIGRCr8
mRatBN7.2X133,502,545 - 133,515,730 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX133,502,869 - 133,515,529 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X73,512,835 - 73,525,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX73,513,028 - 73,525,650 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X74,325,549 - 74,346,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,029,710 - 141,042,620 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX68,801,015 - 68,813,750 (-)NCBICelera
Cytogenetic MapXq36NCBI
CT55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X135,156,536 - 135,171,827 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX135,156,540 - 135,171,398 (-)EnsemblGRCh38hg38GRCh38
GRCh37X134,290,461 - 134,305,751 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X134,118,127 - 134,133,417 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X134,015,982 - 134,031,271NCBI
CeleraX134,675,809 - 134,689,429 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX123,693,013 - 123,709,275 (+)NCBIHuRef
CHM1_1X134,201,434 - 134,216,743 (-)NCBICHM1_1
T2T-CHM13v2.0X133,482,335 - 133,497,625 (-)NCBIT2T-CHM13v2.0
Ct55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,726,622 - 52,740,532 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,718,510 - 52,740,410 (+)EnsemblGRCm39 Ensembl
GRCm38X53,724,655 - 53,738,565 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,724,826 - 53,738,441 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X51,028,008 - 51,041,399 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X49,919,453 - 49,933,068 (+)NCBIMGSCv36mm8
CeleraX41,050,931 - 41,064,534 (+)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.99NCBI
Ct55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004956648483 - 703 (-)NCBIChiLan1.0ChiLan1.0
CT55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X105,741,570 - 105,753,979 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX91,747,994 - 91,760,405 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X107,502,010 - 107,514,423 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X104,908,030 - 104,920,439 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X106,776,999 - 106,789,412 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X106,936,145 - 106,948,552 (-)NCBIUU_Cfam_GSD_1.0
Ct55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,127,784 - 104,141,020 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493651311,473,810 - 11,496,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CT55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X110,848,227 - 110,890,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X126,871,316 - 126,901,050 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Ct55
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:54
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000031815
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2
Low 20
Below cutoff 9 7 1 7 1 1 35 4 8 1 1

Sequence


RefSeq Acc Id: ENSRNOT00000031815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX133,502,869 - 133,515,529 (+)Ensembl
Rnor_6.0 EnsemblX73,513,028 - 73,525,650 (-)Ensembl
RefSeq Acc Id: XM_228664   ⟹   XP_228664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X138,525,325 - 138,538,521 (+)NCBI
mRatBN7.2X133,502,545 - 133,515,730 (+)NCBI
Rnor_6.0X73,512,835 - 73,525,680 (-)NCBI
Rnor_5.0X74,325,549 - 74,346,126 (-)NCBI
RGSC_v3.4X141,029,710 - 141,042,620 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_228664 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85064 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000082251
  ENSRNOP00000082251.1
RefSeq Acc Id: XP_228664   ⟸   XM_228664
- UniProtKB: A0A8I5ZUT8 (UniProtKB/TrEMBL)
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560456 AgrOrtholog
BioCyc Gene G2FUF-958 BioCyc
Ensembl Genes ENSRNOG00000027899 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031815.3 UniProtKB/TrEMBL
KEGG Report rno:317310 UniProtKB/TrEMBL
NCBI Gene 317310 ENTREZGENE
PANTHER CANCER/TESTIS ANTIGEN 55 UniProtKB/TrEMBL
  CANCER/TESTIS ANTIGEN 55 UniProtKB/TrEMBL
PhenoGen Ct55 PhenoGen
RatGTEx ENSRNOG00000027899 RatGTEx
UniProt A0A8I5ZUT8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-13 Ct55  cancer/testis antigen 55  RGD1560456  similar to chromosome X open reading frame 48  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560456  similar to chromosome X open reading frame 48   RGD1560456_predicted  similar to chromosome X open reading frame 48 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560456_predicted  similar to chromosome X open reading frame 48 (predicted)  LOC317310  similar to chromosome X open reading frame 48  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317310  similar to chromosome X open reading frame 48      Symbol and Name status set to provisional 70820 PROVISIONAL