Tenm1 (teneurin transmembrane protein 1) - Rat Genome Database
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Gene: Tenm1 (teneurin transmembrane protein 1) Rattus norvegicus
Analyze
Symbol: Tenm1
Name: teneurin transmembrane protein 1
RGD ID: 1561678
Description: Predicted to have protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in positive regulation of cellular component biogenesis; positive regulation of protein phosphorylation; and regulation of transcription by RNA polymerase III. Predicted to localize to several cellular components, including extracellular region; integral component of plasma membrane; and perinuclear region of cytoplasm. Orthologous to human TENM1 (teneurin transmembrane protein 1); INTERACTS WITH bisphenol A; (+)-catechin (ortholog); 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC298168; LOW QUALITY PROTEIN: teneurin-1; Odz1; protein Odd Oz/ten-m homolog 1; RGD1561678; similar to odd Oz/ten-m homolog 1; similar to Ten-m1; teneurin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
Rnor_6.0X128,923,951 - 128,951,520 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0X129,034,755 - 129,336,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X129,005,588 - 129,870,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X1,895,286 - 2,529,211 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX120,513,461 - 120,912,284 (-)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10225957   PMID:12000766   PMID:18082275   PMID:22209827   PMID:22698694   PMID:23026563  


Genomics

Comparative Map Data
Tenm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
Rnor_6.0X128,923,951 - 128,951,520 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0X129,034,755 - 129,336,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X129,005,588 - 129,870,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X1,895,286 - 2,529,211 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX120,513,461 - 120,912,284 (-)NCBICelera
Cytogenetic MapXq35NCBI
TENM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX124,375,903 - 124,963,817 (-)EnsemblGRCh38hg38GRCh38
GRCh38X124,375,903 - 125,204,381 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X123,509,753 - 124,097,666 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X123,339,504 - 123,925,347 (-)NCBINCBI36hg18NCBI36
Build 34X123,239,869 - 123,823,201NCBI
CeleraX123,894,317 - 124,482,247 (-)NCBI
Cytogenetic MapXq25NCBI
HuRefX112,890,871 - 113,481,233 (-)NCBIHuRef
CHM1_1X123,420,772 - 124,008,695 (-)NCBICHM1_1
Tenm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X41,616,743 - 42,518,045 (-)NCBIGRCm39mm39
GRCm38X42,527,866 - 43,429,168 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX42,527,866 - 43,429,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X39,885,568 - 40,627,963 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X38,777,018 - 39,519,413 (-)NCBImm8
CeleraX30,106,289 - 30,816,175 (-)NCBICelera
Cytogenetic MapXA4NCBI
Tenm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554739,770,364 - 10,337,379 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554739,557,822 - 10,342,007 (+)NCBIChiLan1.0ChiLan1.0
TENM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X123,743,454 - 124,106,221 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,742,330 - 124,333,000 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X113,568,341 - 114,399,131 (-)NCBIMhudiblu_PPA_v0panPan3
TENM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX95,769,881 - 96,550,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X95,766,173 - 96,565,995 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tenm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364795,603,944 - 6,254,846 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,856,938 - 102,411,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,853,340 - 102,641,299 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,722,711 - 117,279,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TENM1
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Tenm1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247973,146,824 - 3,732,968 (-)NCBI

Position Markers
DXGot62  
Rat AssemblyChrPosition (strand)SourceJBrowse
CeleraX121,122,015 - 121,122,193UniSTS
Cytogenetic MapXq11UniSTS
DXMco2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X129,028,431 - 129,028,712NCBIRnor6.0
Rnor_5.0X129,109,240 - 129,109,521UniSTSRnor5.0
RGSC_v3.4X2,438,798 - 2,439,078RGDRGSC3.4
RGSC_v3.4X2,438,799 - 2,439,078UniSTSRGSC3.4
RGSC_v3.1X2,438,798 - 2,439,078RGD
CeleraX120,619,118 - 120,619,397UniSTS
Cytogenetic MapXq11UniSTS
RH142840  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X129,037,721 - 129,037,904NCBIRnor6.0
Rnor_5.0X129,118,530 - 129,118,713UniSTSRnor5.0
RGSC_v3.4X2,428,895 - 2,429,078UniSTSRGSC3.4
CeleraX120,628,406 - 120,628,589UniSTS
Cytogenetic MapXq11UniSTS
BE106633  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X128,959,834 - 128,959,983NCBIRnor6.0
Rnor_5.0X129,040,990 - 129,041,139UniSTSRnor5.0
RGSC_v3.4X2,496,956 - 2,497,105UniSTSRGSC3.4
CeleraX120,548,924 - 120,549,073UniSTS
RH 3.4 Map5716.6UniSTS
Cytogenetic MapXq11UniSTS
AU047413  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X129,246,693 - 129,246,838NCBIRnor6.0
Rnor_5.0X129,327,512 - 129,327,657UniSTSRnor5.0
RGSC_v3.4X2,220,849 - 2,220,994UniSTSRGSC3.4
CeleraX120,829,307 - 120,829,452UniSTS
Cytogenetic MapXq11UniSTS
ODZ1_364  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X128,928,398 - 128,929,061NCBIRnor6.0
Rnor_5.0X129,010,035 - 129,010,698UniSTSRnor5.0
RGSC_v3.4X2,528,642 - 2,529,305UniSTSRGSC3.4
CeleraX120,517,908 - 120,518,571UniSTS
Cytogenetic MapXq11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X44320616158345622Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X101333032146333032Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX107886746152409805Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X110957467155957467Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X110957467155957467Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118715462159970021Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX120045041143145818Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X121442246134627946Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008773532   ⟹   XP_008771754
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X128,923,951 - 128,951,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773533   ⟹   XP_008771755
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X129,034,755 - 129,336,023 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588119   ⟹   XP_017443608
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX120,513,461 - 120,912,284 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602383   ⟹   XP_017457872
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X129,034,755 - 129,336,023 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017602384   ⟹   XP_017457873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X129,034,755 - 129,336,023 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100429   ⟹   XP_038956357
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
RefSeq Acc Id: XM_039100431   ⟹   XP_038956359
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
RefSeq Acc Id: XM_039100432   ⟹   XP_038956360
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
RefSeq Acc Id: XM_039100433   ⟹   XP_038956361
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
RefSeq Acc Id: XM_039100434   ⟹   XP_038956362
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X121,400,466 - 122,289,877 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008771754   ⟸   XM_008773532
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008771755   ⟸   XM_008773533
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017443608   ⟸   XM_017588119
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017457873   ⟸   XM_017602384
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017457872   ⟸   XM_017602383
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038956360   ⟸   XM_039100432
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956361   ⟸   XM_039100433
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038956362   ⟸   XM_039100434
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038956357   ⟸   XM_039100429
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956359   ⟸   XM_039100431
- Peptide Label: isoform X1


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
X 128928784 128928785 T C snv WKY/N (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561678 AgrOrtholog
NCBI Gene 298168 ENTREZGENE
PhenoGen Tenm1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Tenm1  teneurin transmembrane protein 1  LOC683585  similar to odd Oz/ten-m homolog 1  Data Merged 1643240 APPROVED
2012-10-11 Tenm1  teneurin transmembrane protein 1  RGD1561678  similar to Ten-m1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561678  similar to Ten-m1   RGD1561678_predicted  similar to Ten-m1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC683585  similar to odd Oz/ten-m homolog 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1561678_predicted  similar to Ten-m1 (predicted)  LOC298168  similar to Ten-m1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC298168  similar to Ten-m1      Symbol and Name status set to provisional 70820 PROVISIONAL