Pmpcb-ps1 (peptidase, mitochondrial processing subunit beta, pseudogene 1) - Rat Genome Database

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Gene: Pmpcb-ps1 (peptidase, mitochondrial processing subunit beta, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Pmpcb-ps1
Name: peptidase, mitochondrial processing subunit beta, pseudogene 1
RGD ID: 1561860
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC317414; RGD1561860; similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52); similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP, P-52); similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP; P-52)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X105,367,143 - 105,368,536 (-)NCBIGRCr8
mRatBN7.2X100,574,877 - 100,579,240 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X107,892,222 - 107,898,270 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X107,765,483 - 107,771,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X124,597,398 - 124,683,495 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX101,399,641 - 101,405,689 (-)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Pmpcb-ps1
15 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat

Markers in Region
DXGot117  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X100,605,465 - 100,605,611 (+)MAPPERmRatBN7.2
Rnor_6.0X107,923,297 - 107,923,442NCBIRnor6.0
Rnor_5.0X107,794,503 - 107,794,648UniSTSRnor5.0
RGSC_v3.4X124,631,992 - 124,632,137UniSTSRGSC3.4
CeleraX101,424,949 - 101,425,094UniSTS
Cytogenetic MapXq35UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1582 BioCyc
NCBI Gene 317414 ENTREZGENE
PhenoGen Pmpcb-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pmpcb-ps1  peptidase, mitochondrial processing subunit beta, pseudogene 1  RGD1561860  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP; P-52)  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561860  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP; P-52)   RGD1561860_predicted  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP; P-52) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-10 RGD1561860_predicted  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP; P-52) (predicted)    similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1561860_predicted  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52) (predicted)  LOC317414  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317414  similar to Mitochondrial processing peptidase beta subunit, mitochondrial precursor (Beta-MPP) (P-52)      Symbol and Name status set to provisional 70820 PROVISIONAL