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Gene: Rtl4 (retrotransposon Gag like 4) Rattus norvegicus
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Symbol: Rtl4
Name: retrotransposon Gag like 4
Description: Predicted to have nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in cognition and norepinephrine metabolic process. Orthologous to human RTL4 (retrotransposon Gag like 4); INTERACTS WITH bisphenol A; 1,2-dichloroethane (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC680778; similar to zinc finger, CCHC domain containing 5; Zcchc16; zinc finger CCHC domain-containing protein 16; zinc finger CCHC-type containing 16; zinc finger, CCHC domain containing 16
Orthologs:
Homo sapiens (human) : RTL4 (retrotransposon Gag like 4)  HGNC  Alliance
Mus musculus (house mouse) : Rtl4 (retrotransposon Gag like 4)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rtl4 (retrotransposon Gag like 4)
Pan paniscus (bonobo/pygmy chimpanzee) : RTL4 (retrotransposon Gag like 4)
Canis lupus familiaris (dog) : RTL4 (retrotransposon Gag like 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rtl4 (retrotransposon Gag like 4)
Sus scrofa (pig) : RTL4 (retrotransposon Gag like 4)
Chlorocebus sabaeus (African green monkey) : RTL4 (retrotransposon Gag like 4)
Heterocephalus glaber (naked mole-rat) : Rtl4 (retrotransposon Gag like 4)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X115,908,999 - 116,402,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX116,399,611 - 116,400,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X116,465,029 - 116,543,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,404,885 - 33,405,790 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX107,618,493 - 108,025,880 (+)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rtl4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1588188
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.