Rtl4 (retrotransposon Gag like 4) - Rat Genome Database

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Gene: Rtl4 (retrotransposon Gag like 4) Rattus norvegicus
Analyze
Symbol: Rtl4
Name: retrotransposon Gag like 4
RGD ID: 1588188
Description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within cognition and norepinephrine metabolic process. Orthologous to human RTL4 (retrotransposon Gag like 4); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC680778; retrotransposon Gag-like protein 4; similar to zinc finger, CCHC domain containing 5; Zcchc16; zinc finger CCHC domain-containing protein 16; zinc finger CCHC-type containing 16; zinc finger, CCHC domain containing 16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X113,027,697 - 113,438,382 (+)NCBIGRCr8
mRatBN7.2X108,231,052 - 108,641,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX108,633,651 - 108,640,050 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X115,908,999 - 116,402,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX116,399,611 - 116,400,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X116,465,029 - 116,543,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,404,885 - 33,405,790 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX107,618,493 - 108,025,880 (+)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26402067  


Genomics

Comparative Map Data
Rtl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X113,027,697 - 113,438,382 (+)NCBIGRCr8
mRatBN7.2X108,231,052 - 108,641,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX108,633,651 - 108,640,050 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X115,908,999 - 116,402,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX116,399,611 - 116,400,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X116,465,029 - 116,543,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,404,885 - 33,405,790 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX107,618,493 - 108,025,880 (+)NCBICelera
Cytogenetic MapXq34NCBI
RTL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X112,083,013 - 112,457,514 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX112,083,016 - 112,457,514 (+)EnsemblGRCh38hg38GRCh38
GRCh37X111,326,241 - 111,700,742 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X111,212,909 - 111,587,129 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX111,805,763 - 112,184,591 (+)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX100,946,374 - 101,322,365 (+)NCBIHuRef
CHM1_1X111,237,477 - 111,611,887 (+)NCBICHM1_1
T2T-CHM13v2.0X110,531,358 - 110,907,626 (+)NCBIT2T-CHM13v2.0
Rtl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X143,471,147 - 143,905,410 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX143,471,903 - 143,905,407 (+)EnsemblGRCm39 Ensembl
GRCm38X144,688,209 - 145,122,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX144,688,907 - 145,122,411 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X141,123,450 - 141,556,953 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X140,365,456 - 140,368,776 (+)NCBIMGSCv36mm8
CeleraX128,644,641 - 129,073,163 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX65.85NCBI
Rtl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554903,403,958 - 3,497,789 (-)NCBIChiLan1.0ChiLan1.0
RTL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X111,916,075 - 111,946,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X111,919,823 - 111,949,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X101,191,619 - 101,570,815 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X112,024,468 - 112,027,070 (+)NCBIpanpan1.1PanPan1.1panPan2
RTL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X85,117,015 - 85,609,928 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX85,512,467 - 85,513,375 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX71,610,796 - 71,623,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X87,193,067 - 87,205,938 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX87,202,198 - 87,203,106 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X84,656,673 - 84,669,544 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X86,331,789 - 86,344,656 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X86,168,927 - 86,181,831 (+)NCBIUU_Cfam_GSD_1.0
Rtl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X84,383,324 - 84,757,393 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364992,901,534 - 2,904,565 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX92,223,747 - 92,335,430 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X91,920,451 - 92,333,326 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X106,588,456 - 106,697,981 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RTL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X99,857,087 - 100,206,786 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX100,203,031 - 100,203,963 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606525,548,015 - 25,552,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rtl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248033,016,865 - 3,494,115 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rtl4
1446 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:105
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000050854
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 2 38 108 42 34 14 10 14 1 126 63 93 45 59 20

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050854   ⟹   ENSRNOP00000061685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX108,636,062 - 108,640,050 (+)Ensembl
Rnor_6.0 EnsemblX116,399,611 - 116,400,516 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116205   ⟹   ENSRNOP00000089653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX108,633,651 - 108,640,050 (+)Ensembl
RefSeq Acc Id: XM_017602364   ⟹   XP_017457853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
mRatBN7.2X108,231,796 - 108,641,768 (+)NCBI
Rnor_6.0X115,908,999 - 116,402,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100321   ⟹   XP_038956249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
mRatBN7.2X108,231,796 - 108,641,768 (+)NCBI
RefSeq Acc Id: XM_039100323   ⟹   XP_038956251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
mRatBN7.2X108,231,796 - 108,641,768 (+)NCBI
RefSeq Acc Id: XM_039100324   ⟹   XP_038956252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,414,825 - 113,438,382 (+)NCBI
mRatBN7.2X108,617,168 - 108,641,768 (+)NCBI
RefSeq Acc Id: XM_063280473   ⟹   XP_063136543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280474   ⟹   XP_063136544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280475   ⟹   XP_063136545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280476   ⟹   XP_063136546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280477   ⟹   XP_063136547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280478   ⟹   XP_063136548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280479   ⟹   XP_063136549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280481   ⟹   XP_063136551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,414,825 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280482   ⟹   XP_063136552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280483   ⟹   XP_063136553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280484   ⟹   XP_063136554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,368,837 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280485   ⟹   XP_063136555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280486   ⟹   XP_063136556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280487   ⟹   XP_063136557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280488   ⟹   XP_063136558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,368,837 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280489   ⟹   XP_063136559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280490   ⟹   XP_063136560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280491   ⟹   XP_063136561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280492   ⟹   XP_063136562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280493   ⟹   XP_063136563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,340,909 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280494   ⟹   XP_063136564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280495   ⟹   XP_063136565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280496   ⟹   XP_063136566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280497   ⟹   XP_063136567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280498   ⟹   XP_063136568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280499   ⟹   XP_063136569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,368,837 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280500   ⟹   XP_063136570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,028,444 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280501   ⟹   XP_063136571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,027,697 - 113,438,382 (+)NCBI
RefSeq Acc Id: XM_063280502   ⟹   XP_063136572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X113,368,837 - 113,438,382 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001420066 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420069 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420070 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420071 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420072 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420074 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420075 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420076 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457853 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956249 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956251 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956252 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136543 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136544 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136545 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136546 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136547 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136548 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136549 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136551 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136552 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136553 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136554 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136555 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136556 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136557 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136558 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136559 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136560 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136561 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136562 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136563 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136564 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136565 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136566 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136567 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136568 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136569 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136570 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136571 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061685.1
  ENSRNOP00000089653.1
RefSeq Acc Id: XP_017457853   ⟸   XM_017602364
- Sequence:
Ensembl Acc Id: ENSRNOP00000061685   ⟸   ENSRNOT00000050854
RefSeq Acc Id: XP_038956249   ⟸   XM_039100321
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956251   ⟸   XM_039100323
RefSeq Acc Id: XP_038956252   ⟸   XM_039100324
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089653   ⟸   ENSRNOT00000116205
RefSeq Acc Id: XP_063136544   ⟸   XM_063280474
RefSeq Acc Id: XP_063136553   ⟸   XM_063280483
RefSeq Acc Id: XP_063136556   ⟸   XM_063280486
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136559   ⟸   XM_063280489
RefSeq Acc Id: XP_063136555   ⟸   XM_063280485
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136552   ⟸   XM_063280482
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136564   ⟸   XM_063280494
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136571   ⟸   XM_063280501
RefSeq Acc Id: XP_063136560   ⟸   XM_063280490
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136557   ⟸   XM_063280487
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136548   ⟸   XM_063280478
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136568   ⟸   XM_063280498
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136546   ⟸   XM_063280476
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136549   ⟸   XM_063280479
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136567   ⟸   XM_063280497
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136543   ⟸   XM_063280473
RefSeq Acc Id: XP_063136545   ⟸   XM_063280475
RefSeq Acc Id: XP_063136547   ⟸   XM_063280477
RefSeq Acc Id: XP_063136561   ⟸   XM_063280491
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136565   ⟸   XM_063280495
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136562   ⟸   XM_063280492
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136566   ⟸   XM_063280496
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136570   ⟸   XM_063280500
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136563   ⟸   XM_063280493
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136554   ⟸   XM_063280484
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136558   ⟸   XM_063280488
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136569   ⟸   XM_063280499
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136572   ⟸   XM_063280502
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136551   ⟸   XM_063280481
- UniProtKB: D4A5N6 (UniProtKB/TrEMBL)
Protein Domains
CCHC-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5N6-F1-model_v2 AlphaFold D4A5N6 1-301 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588188 AgrOrtholog
BioCyc Gene G2FUF-1482 BioCyc
Ensembl Genes ENSRNOG00000031638 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050854.4 UniProtKB/TrEMBL
  ENSRNOT00000116205.1 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro LDOC1-rel UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
KEGG Report rno:680778 UniProtKB/TrEMBL
NCBI Gene 680778 ENTREZGENE
PANTHER PTHR15503 UniProtKB/TrEMBL
  RETROTRANSPOSON GAG-LIKE PROTEIN 4 UniProtKB/TrEMBL
PhenoGen Rtl4 PhenoGen
PROSITE ZF_CCHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031638 RatGTEx
Superfamily-SCOP SSF57756 UniProtKB/TrEMBL
UniProt D4A5N6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Rtl4  retrotransposon Gag like 4  Zcchc16  zinc finger CCHC-type containing 16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-17 Zcchc16  zinc finger CCHC-type containing 16  Zcchc16  zinc finger, CCHC domain containing 16  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Zcchc16  zinc finger, CCHC domain containing 16  LOC100363897  hypothetical protein LOC100363897  Data merged from RGD:2322159 1643240 APPROVED
2010-05-06 LOC100363897  hypothetical protein LOC100363897      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-05 Zcchc16  zinc finger, CCHC domain containing 16  LOC680778  similar to zinc finger, CCHC domain containing 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC680778  similar to zinc finger, CCHC domain containing 5  LOC681883  similar to zinc finger, CCHC domain containing 5  Data merged from RGD:1590483 1643240 APPROVED
2006-11-20 LOC681883  similar to zinc finger, CCHC domain containing 5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC680778  similar to zinc finger, CCHC domain containing 5      Symbol and Name status set to provisional 70820 PROVISIONAL