Rtl4 (retrotransposon Gag like 4) - Rat Genome Database

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Gene: Rtl4 (retrotransposon Gag like 4) Chinchilla lanigera
Analyze
Symbol: Rtl4
Name: retrotransposon Gag like 4
RGD ID: 8891858
Description: INVOLVED IN cognition (ortholog); norepinephrine metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zcchc16; zinc finger CCHC domain-containing protein 16; zinc finger CCHC-type containing 16; zinc finger, CCHC domain containing 16
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554903,403,958 - 3,497,789 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rtl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554903,403,958 - 3,497,789 (-)NCBIChiLan1.0ChiLan1.0
RTL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X112,083,013 - 112,457,514 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX112,083,016 - 112,457,514 (+)EnsemblGRCh38hg38GRCh38
GRCh37X111,326,241 - 111,700,742 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X111,212,909 - 111,587,129 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX111,805,763 - 112,184,591 (+)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX100,946,374 - 101,322,365 (+)NCBIHuRef
CHM1_1X111,237,477 - 111,611,887 (+)NCBICHM1_1
T2T-CHM13v2.0X110,531,358 - 110,907,626 (+)NCBIT2T-CHM13v2.0
Rtl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X143,471,147 - 143,905,410 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX143,471,903 - 143,905,407 (+)EnsemblGRCm39 Ensembl
GRCm38X144,688,209 - 145,122,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX144,688,907 - 145,122,411 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X141,123,450 - 141,556,953 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X140,365,456 - 140,368,776 (+)NCBIMGSCv36mm8
CeleraX128,644,641 - 129,073,163 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX65.85NCBI
Rtl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X113,027,697 - 113,438,382 (+)NCBIGRCr8
mRatBN7.2X108,231,052 - 108,641,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX108,633,651 - 108,640,050 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X115,908,999 - 116,402,406 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX116,399,611 - 116,400,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X116,465,029 - 116,543,231 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X33,404,885 - 33,405,790 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX107,618,493 - 108,025,880 (+)NCBICelera
Cytogenetic MapXq34NCBI
RTL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X111,916,075 - 111,946,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X111,919,823 - 111,949,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X101,191,619 - 101,570,815 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X112,024,468 - 112,027,070 (+)NCBIpanpan1.1PanPan1.1panPan2
RTL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X85,117,015 - 85,609,928 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX85,512,467 - 85,513,375 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX71,610,796 - 71,623,667 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X87,193,067 - 87,205,938 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX87,202,198 - 87,203,106 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X84,656,673 - 84,669,544 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X86,331,789 - 86,344,656 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X86,168,927 - 86,181,831 (+)NCBIUU_Cfam_GSD_1.0
Rtl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X84,383,324 - 84,757,393 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364992,901,534 - 2,904,565 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX92,223,747 - 92,335,430 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X91,920,451 - 92,333,326 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X106,588,456 - 106,697,981 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RTL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X99,857,087 - 100,206,786 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX100,203,031 - 100,203,963 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606525,548,015 - 25,552,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rtl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248033,016,865 - 3,494,115 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013504514   ⟹   XP_013359968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554903,403,958 - 3,497,789 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359968 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013359968   ⟸   XM_013504514
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Zcchc16 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 Rtl4  retrotransposon Gag like 4  Zcchc16  zinc finger CCHC-type containing 16  Symbol and/or name change 5135510 APPROVED
2016-08-03 Zcchc16  zinc finger CCHC-type containing 16    zinc finger, CCHC domain containing 16  Symbol and/or name change 5135510 APPROVED