LOC120099272 (high mobility group protein B4-like) - Rat Genome Database

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Gene: LOC120099272 (high mobility group protein B4-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120099272
Name: high mobility group protein B4-like
RGD ID: 41204737
Description: Predicted to enable DNA binding activity. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X133,746,324 - 133,747,040 (-)NCBIGRCr8
mRatBN7.2X128,868,498 - 128,869,190 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX128,868,574 - 128,869,216 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039100378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000115711   ⟹   ENSRNOP00000086196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX128,868,574 - 128,869,216 (-)Ensembl
RefSeq Acc Id: XM_039100378   ⟹   XP_038956306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X133,746,324 - 133,747,040 (-)NCBI
mRatBN7.2X128,868,498 - 128,869,190 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956306 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086196
  ENSRNOP00000086196.1
  ENSRNOP00000087272.1
Reference Protein Sequences
RefSeq Acc Id: XP_038956306   ⟸   XM_039100378
- UniProtKB: A0A8I6A1Q7 (UniProtKB/TrEMBL),   A0A8I6A6Y4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086196   ⟸   ENSRNOT00000115711
Protein Domains
HMG box

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1116 BioCyc
Ensembl Genes ENSRNOG00000067113 UniProtKB/TrEMBL
  ENSRNOG00000070141 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103726.1 UniProtKB/TrEMBL
  ENSRNOT00000115711.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC120099272 ENTREZGENE
PANTHER HIGH MOBILITY GROUP PROTEIN B4 UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN DSP1 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/TrEMBL
PhenoGen LOC120099272 PhenoGen
PRINTS HIGHMOBLTY12 UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067113 RatGTEx
  ENSRNOG00000070141 RatGTEx
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A8I6A1Q7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6Y4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120099272  high mobility group protein B4-like      Symbol and Name status set to provisional 70820 PROVISIONAL