Stag2 (stromal antigen 2) - Rat Genome Database

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Gene: Stag2 (stromal antigen 2) Rattus norvegicus
Analyze
Symbol: Stag2
Name: stromal antigen 2
RGD ID: 1562042
Description: Predicted to enable chromatin binding activity. Predicted to be involved in mitotic spindle assembly and sister chromatid cohesion. Predicted to act upstream of or within stem cell population maintenance. Predicted to be located in mitotic spindle pole and nuclear lumen. Predicted to be part of meiotic cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in Mullegama-Klein-Martinez syndrome and holoprosencephaly. Orthologous to human STAG2 (stromal antigen 2); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cohesin subunit SA-2; LOC313304; RGD1562042; similar to stromal antigen 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X120,974,687 - 121,105,677 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX120,974,857 - 121,105,677 (+)Ensembl
Rnor_6.0X128,493,603 - 128,624,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX128,493,614 - 128,624,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X128,583,874 - 128,712,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X2,840,102 - 2,970,905 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX120,088,891 - 120,219,108 (+)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP,ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
Echimidine  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glucose  (ISO)
Lasiocarpine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
monocrotaline  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
riddelliine  (ISO)
selenium atom  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11590136   PMID:15917200   PMID:16682347   PMID:19946888   PMID:20720539   PMID:22415368   PMID:22780989   PMID:23920377   PMID:28296084   PMID:29263825  


Genomics

Comparative Map Data
Stag2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X120,974,687 - 121,105,677 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX120,974,857 - 121,105,677 (+)Ensembl
Rnor_6.0X128,493,603 - 128,624,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX128,493,614 - 128,624,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X128,583,874 - 128,712,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X2,840,102 - 2,970,905 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX120,088,891 - 120,219,108 (+)NCBICelera
Cytogenetic MapXq35NCBI
STAG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X123,960,560 - 124,102,656 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX123,960,212 - 124,422,664 (+)EnsemblGRCh38hg38GRCh38
GRCh37X123,094,410 - 123,236,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X122,922,156 - 123,064,187 (+)NCBINCBI36hg18NCBI36
Build 34X122,821,123 - 122,961,881NCBI
CeleraX123,479,289 - 123,621,302 (+)NCBI
Cytogenetic MapXq25NCBI
HuRefX112,477,430 - 112,618,677 (+)NCBIHuRef
CHM1_1X123,005,854 - 123,147,859 (+)NCBICHM1_1
T2T-CHM13v2.0X122,270,973 - 122,413,073 (+)NCBI
Stag2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X41,238,172 - 41,366,063 (+)NCBIGRCm39mm39
GRCm39 EnsemblX41,238,194 - 41,366,062 (+)Ensembl
GRCm38X42,149,297 - 42,277,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX42,149,317 - 42,277,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X39,502,589 - 39,630,352 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X38,437,644 - 38,520,801 (+)NCBImm8
CeleraX29,725,317 - 29,852,205 (+)NCBICelera
Cytogenetic MapXA4NCBI
Stag2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547310,626,626 - 10,709,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547310,620,264 - 10,765,806 (-)NCBIChiLan1.0ChiLan1.0
STAG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X123,329,547 - 123,469,475 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,389,162 - 123,472,474 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X113,150,853 - 113,293,395 (+)NCBIMhudiblu_PPA_v0panPan3
STAG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X95,397,174 - 95,532,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX95,396,870 - 95,531,133 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX81,463,787 - 81,600,314 (+)NCBI
ROS_Cfam_1.0X97,180,536 - 97,317,088 (+)NCBI
ROS_Cfam_1.0 EnsemblX97,181,684 - 97,317,091 (+)Ensembl
UMICH_Zoey_3.1X94,612,633 - 94,748,876 (+)NCBI
UNSW_CanFamBas_1.0X96,368,835 - 96,505,478 (+)NCBI
UU_Cfam_GSD_1.0X96,158,221 - 96,294,739 (+)NCBI
Stag2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X94,352,368 - 94,478,963 (+)NCBI
SpeTri2.0NW_0049364796,508,539 - 6,635,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,478,247 - 101,617,563 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,476,117 - 101,617,405 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,293,177 - 116,433,500 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606536,695,879 - 36,833,587 (+)NCBIVero_WHO_p1.0
Stag2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247972,719,508 - 2,794,379 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247972,659,785 - 2,794,168 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
DXS7906  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X120,977,573 - 120,977,655 (+)MAPPERmRatBN7.2
Rnor_6.0X128,496,331 - 128,496,412NCBIRnor6.0
Rnor_5.0X128,586,591 - 128,586,672UniSTSRnor5.0
RGSC_v3.4X2,968,108 - 2,968,189UniSTSRGSC3.4
CeleraX120,091,563 - 120,091,644UniSTS
Cytogenetic MapXq11UniSTS
stSG633685  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,103,852 - 121,104,991 (+)MAPPERmRatBN7.2
Rnor_6.0X128,622,594 - 128,623,732NCBIRnor6.0
Rnor_5.0X128,711,027 - 128,712,165UniSTSRnor5.0
RGSC_v3.4X2,840,788 - 2,841,926UniSTSRGSC3.4
CeleraX120,217,284 - 120,218,422UniSTS
Cytogenetic MapXq11UniSTS
ECD13650  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X120,975,484 - 120,976,071 (+)MAPPERmRatBN7.2
Rnor_6.0X128,494,242 - 128,494,828NCBIRnor6.0
Rnor_5.0X128,584,502 - 128,585,088UniSTSRnor5.0
RGSC_v3.4X2,969,692 - 2,970,278UniSTSRGSC3.4
CeleraX120,089,519 - 120,090,105UniSTS
Cytogenetic MapXq11UniSTS
REN51965  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X120,977,508 - 120,977,759 (+)MAPPERmRatBN7.2
Rnor_6.0X128,496,266 - 128,496,516NCBIRnor6.0
Rnor_5.0X128,586,526 - 128,586,776UniSTSRnor5.0
RGSC_v3.4X2,968,004 - 2,968,254UniSTSRGSC3.4
CeleraX120,091,498 - 120,091,748UniSTS
Cytogenetic MapXq11UniSTS
REN51966  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X120,977,746 - 120,978,004 (+)MAPPERmRatBN7.2
Rnor_6.0X128,496,504 - 128,496,761NCBIRnor6.0
Rnor_5.0X128,586,764 - 128,587,021UniSTSRnor5.0
RGSC_v3.4X2,967,759 - 2,968,016UniSTSRGSC3.4
CeleraX120,091,736 - 120,091,993UniSTS
Cytogenetic MapXq11UniSTS
REN51964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X120,977,260 - 120,977,527 (+)MAPPERmRatBN7.2
Rnor_6.0X128,496,018 - 128,496,284NCBIRnor6.0
Rnor_5.0X128,586,278 - 128,586,544UniSTSRnor5.0
RGSC_v3.4X2,968,236 - 2,968,502UniSTSRGSC3.4
CeleraX120,091,250 - 120,091,516UniSTS
Cytogenetic MapXq11UniSTS
REN52332  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,057,921 - 121,058,139 (+)MAPPERmRatBN7.2
Rnor_6.0X128,576,670 - 128,576,887NCBIRnor6.0
Rnor_5.0X128,665,102 - 128,665,319UniSTSRnor5.0
RGSC_v3.4X2,887,633 - 2,887,850UniSTSRGSC3.4
CeleraX120,171,330 - 120,171,547UniSTS
Cytogenetic MapXq11UniSTS
REN52504  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,095,306 - 121,095,580 (+)MAPPERmRatBN7.2
Rnor_6.0X128,614,048 - 128,614,321NCBIRnor6.0
Rnor_5.0X128,702,481 - 128,702,754UniSTSRnor5.0
RGSC_v3.4X2,850,199 - 2,850,472UniSTSRGSC3.4
CeleraX120,208,738 - 120,209,011UniSTS
Cytogenetic MapXq11UniSTS
REN52551  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,104,358 - 121,104,616 (+)MAPPERmRatBN7.2
Rnor_6.0X128,623,100 - 128,623,357NCBIRnor6.0
Rnor_5.0X128,711,533 - 128,711,790UniSTSRnor5.0
RGSC_v3.4X2,841,163 - 2,841,420UniSTSRGSC3.4
CeleraX120,217,790 - 120,218,047UniSTS
Cytogenetic MapXq11UniSTS
REN52552  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,104,600 - 121,104,853 (+)MAPPERmRatBN7.2
Rnor_6.0X128,623,342 - 128,623,594NCBIRnor6.0
Rnor_5.0X128,711,775 - 128,712,027UniSTSRnor5.0
RGSC_v3.4X2,840,926 - 2,841,178UniSTSRGSC3.4
CeleraX120,218,032 - 120,218,284UniSTS
Cytogenetic MapXq11UniSTS
REN52553  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X121,104,812 - 121,105,074 (+)MAPPERmRatBN7.2
Rnor_6.0X128,623,554 - 128,623,815NCBIRnor6.0
Rnor_5.0X128,711,987 - 128,712,248UniSTSRnor5.0
RGSC_v3.4X2,840,705 - 2,840,966UniSTSRGSC3.4
CeleraX120,218,244 - 120,218,505UniSTS
Cytogenetic MapXq11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:608
Count of miRNA genes:262
Interacting mature miRNAs:348
Transcripts:ENSRNOT00000044240
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 56 40 19 40 8 10 74 35 35 11 8
Low 3 1 1 1 1 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044240   ⟹   ENSRNOP00000044231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX120,974,857 - 121,105,677 (+)Ensembl
Rnor_6.0 EnsemblX128,493,614 - 128,624,418 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082970   ⟹   ENSRNOP00000073004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX120,974,857 - 121,105,677 (+)Ensembl
Rnor_6.0 EnsemblX128,550,178 - 128,622,646 (+)Ensembl
RefSeq Acc Id: NM_001173507   ⟹   NP_001166978
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,974,857 - 121,105,677 (+)NCBI
Rnor_6.0X128,493,614 - 128,624,418 (+)NCBI
Rnor_5.0X128,583,874 - 128,712,851 (+)NCBI
CeleraX120,088,891 - 120,219,108 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006257503   ⟹   XP_006257565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,977,640 - 121,103,898 (+)NCBI
Rnor_6.0X128,495,270 - 128,624,343 (+)NCBI
Rnor_5.0X128,583,874 - 128,712,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773521   ⟹   XP_008771743
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,974,687 - 121,105,597 (+)NCBI
Rnor_6.0X128,493,603 - 128,622,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773522   ⟹   XP_008771744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,976,553 - 121,103,898 (+)NCBI
Rnor_6.0X128,495,248 - 128,622,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602032   ⟹   XP_017457521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,975,305 - 121,103,898 (+)NCBI
Rnor_6.0X128,494,956 - 128,622,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099693   ⟹   XP_038955621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,975,305 - 121,103,898 (+)NCBI
RefSeq Acc Id: XM_039099694   ⟹   XP_038955622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X120,975,272 - 121,103,898 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001166978   ⟸   NM_001173507
- UniProtKB: D3ZXT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257565   ⟸   XM_006257503
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771743   ⟸   XM_008773521
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771744   ⟸   XM_008773522
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457521   ⟸   XM_017602032
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4D9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073004   ⟸   ENSRNOT00000082970
RefSeq Acc Id: ENSRNOP00000044231   ⟸   ENSRNOT00000044240
RefSeq Acc Id: XP_038955622   ⟸   XM_039099694
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955621   ⟸   XM_039099693
- Peptide Label: isoform X1
Protein Domains
SCD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4D9-F1-model_v2 AlphaFold A0A0G2K4D9 1-1268 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702003
Promoter ID:EPDNEW_R12527
Type:multiple initiation site
Name:Stag2_1
Description:stromal antigen 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X128,493,594 - 128,493,654EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
X 128659635 128659636 A T snv F344/Stm (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562042 AgrOrtholog
BioCyc Gene G2FUF-1231 BioCyc
Ensembl Genes ENSRNOG00000029885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000044231 ENTREZGENE
  ENSRNOP00000044231.3 UniProtKB/TrEMBL
  ENSRNOP00000073004 ENTREZGENE
  ENSRNOP00000073004.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044240 ENTREZGENE
  ENSRNOT00000044240.6 UniProtKB/TrEMBL
  ENSRNOT00000082970 ENTREZGENE
  ENSRNOT00000082970.2 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Cohesin_Scc3/SA UniProtKB/TrEMBL
  SCD UniProtKB/TrEMBL
  STAG UniProtKB/TrEMBL
KEGG Report rno:313304 UniProtKB/TrEMBL
NCBI Gene 313304 ENTREZGENE
PANTHER PTHR11199 UniProtKB/TrEMBL
Pfam STAG UniProtKB/TrEMBL
PhenoGen Stag2 PhenoGen
PROSITE SCD UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K4D9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Stag2  stromal antigen 2   Stag2_predicted  stromal antigen 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Stag2_predicted  stromal antigen 2 (predicted)  RGD1562042_predicted  similar to stromal antigen 2 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1562042_predicted  similar to stromal antigen 2 (predicted)  LOC313304  similar to stromal antigen 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313304  similar to stromal antigen 2      Symbol and Name status set to provisional 70820 PROVISIONAL