AA964352 Marker Search Result - Rat Genome Database

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Marker: AA964352

Symbol: AA964352
Previously known as:
RGD ID: 5065888
Expected Size: 208 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X64,269,831 - 64,270,039 (+)MAPPERmRatBN7.2
Rnor_6.0X68,903,708 - 68,903,915NCBIRnor6.0
Rnor_5.0X69,776,795 - 69,777,002UniSTSRnor5.0
RGSC_v3.4X87,175,656 - 87,175,863UniSTSRGSC3.4
CeleraX64,637,423 - 64,637,630UniSTS
Cytogenetic MapXq22.1UniSTS
Is Marker For: Genes:   Efnb1  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ACACAAATGGCAACAGAATCAAA
Reverse Primer GGCTGCTAACAGACTGCCACT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2540Efnb1ephrin B1X6425735164270158Rat

Nucleotide Sequences
RefSeq Transcripts NM_017089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC061744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
70221Bp56Blood pressure QTL 564.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X5704214165612192Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 25186 UniSTS
UniSTS 248424 UniSTS