Zdhhc15 (zinc finger DHHC-type palmitoyltransferase 15) - Rat Genome Database

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Gene: Zdhhc15 (zinc finger DHHC-type palmitoyltransferase 15) Rattus norvegicus
Analyze
Symbol: Zdhhc15
Name: zinc finger DHHC-type palmitoyltransferase 15
RGD ID: 1562075
Description: Predicted to enable protein-cysteine S-palmitoyltransferase activity and zinc ion binding activity. Involved in positive regulation of dendrite development; protein localization to postsynapse; and regulation of dendritic spine morphogenesis. Located in Golgi membrane and postsynapse. Orthologous to human ZDHHC15 (zinc finger DHHC-type palmitoyltransferase 15); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acyltransferase ZDHHC15; DHHC-15; LOC317235; membrane-associated DHHC15 zinc finger protein; palmitoyltransferase ZDHHC15; zinc finger DHHC domain-containing protein 15; zinc finger, DHHC domain containing 15; zinc finger, DHHC-type containing 15
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X73,633,977 - 73,767,451 (-)NCBIGRCr8
mRatBN7.2X69,568,086 - 69,701,756 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,574,124 - 69,701,756 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX71,083,209 - 71,210,844 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X74,583,502 - 74,711,138 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X72,144,696 - 72,272,344 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X75,433,957 - 75,566,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX75,439,778 - 75,566,481 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X76,236,346 - 76,364,662 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,568,201 - 92,700,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX70,927,489 - 71,054,488 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zdhhc15Ratautistic disorder  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Zdhhc15Ratautosomal hemophilia A  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Zdhhc15Ratfactor VIII deficiency  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Zdhhc15Ratnon-syndromic X-linked intellectual disability 91  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disability and X-linked 91ClinVarPMID:15915161 and PMID:25741868
Zdhhc15Ratoculocutaneous albinism type IB  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: Oculocutaneous albinism type 1BClinVarPMID:25741868
Zdhhc15Ratspastic diplegia  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic diplegiaClinVar 
Zdhhc15Ratsyndromic X-linked intellectual disability Lubs type  ISOZDHHC15 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868

1 to 20 of 32 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zdhhc15Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ZDHHC15 mRNA]CTDPMID:31150632
Zdhhc15Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ZDHHC15 mRNACTDPMID:32109520
Zdhhc15Rataflatoxin B1 decreases methylationISOZDHHC15 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of ZDHHC15 gene and Aflatoxin B1 results in decreased methylation of ZDHHC15 intronCTDPMID:27153756 and PMID:30157460
Zdhhc15Ratamiodarone increases expressionISOZDHHC15 (Homo sapiens)6480464Amiodarone results in increased expression of ZDHHC15 mRNACTDPMID:19774075
Zdhhc15Rataristolochic acid A decreases expressionISOZDHHC15 (Homo sapiens)6480464aristolochic acid I results in decreased expression of ZDHHC15 mRNACTDPMID:33212167
Zdhhc15Ratarsenite(3-) decreases methylationISOZDHHC15 (Homo sapiens)6480464arsenite results in decreased methylation of ZDHHC15 promoterCTDPMID:23974009
Zdhhc15Ratatrazine increases expressionEXP 6480464Atrazine results in increased expression of ZDHHC15 mRNACTDPMID:36841081
Zdhhc15Ratbenzo[a]pyrene affects methylationISOZDHHC15 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of ZDHHC15 exon and Benzo(a)pyrene affects the methylation of ZDHHC15 promoterCTDPMID:27901495
Zdhhc15Ratbenzo[a]pyrene increases methylationISOZDHHC15 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of ZDHHC15 5' UTRCTDPMID:27901495
Zdhhc15Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of ZDHHC15 mRNACTDPMID:25181051
Zdhhc15Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of ZDHHC15 mRNACTDPMID:32145629
Zdhhc15Ratendosulfan decreases expressionEXP 6480464Endosulfan results in decreased expression of ZDHHC15 mRNACTDPMID:29391264
Zdhhc15Ratfenfluramine increases expressionISOZDHHC15 (Homo sapiens)6480464Fenfluramine results in increased expression of ZDHHC15 mRNACTDPMID:22140631
Zdhhc15Ratgentamycin decreases expressionEXP 6480464Gentamicins results in decreased expression of ZDHHC15 mRNACTDPMID:33387578
Zdhhc15Ratokadaic acid increases expressionISOZdhhc15 (Mus musculus)6480464Okadaic Acid results in increased expression of ZDHHC15 mRNACTDPMID:25270620
Zdhhc15Ratozone multiple interactionsISOZdhhc15 (Mus musculus)6480464[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased expression of ZDHHC15 mRNA and [Air Pollutants results in increased abundance of Ozone] which results in increased expression of ZDHHC15 mRNACTDPMID:34911549
Zdhhc15Ratparacetamol affects expressionEXP 6480464Acetaminophen affects the expression of ZDHHC15 mRNACTDPMID:33387578
Zdhhc15Ratperfluorohexanesulfonic acid decreases expressionISOZDHHC15 (Homo sapiens)6480464perfluorohexanesulfonic acid results in decreased expression of ZDHHC15 mRNACTDPMID:25812627
Zdhhc15Ratperfluorononanoic acid decreases expressionISOZDHHC15 (Homo sapiens)6480464perfluoro-n-nonanoic acid results in decreased expression of ZDHHC15 mRNACTDPMID:25812627
Zdhhc15Ratperfluorooctanoic acid decreases expressionISOZDHHC15 (Homo sapiens)6480464perfluorooctanoic acid results in decreased expression of ZDHHC15 mRNACTDPMID:25812627

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Biological Process
1 to 17 of 17 rows

  
Object Symbol
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Term
Qualifier
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Reference
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Source
Original Reference(s)
Zdhhc15Ratestablishment of protein localization acts_upstream_of_or_withinISOZdhhc15 (Mus musculus)1624291 PMID:15603741RGDPMID:15603741
Zdhhc15Ratpeptidyl-L-cysteine S-palmitoylation involved_inISSUniProtKB:Q96MV81600115GO_REF:0000024UniProtGO_REF:0000024
Zdhhc15Ratpeptidyl-L-cysteine S-palmitoylation involved_inISOZdhhc15 (Mus musculus)1624291 PMID:15603741 and PMID:28167757RGDPMID:15603741 and PMID:28167757
Zdhhc15Ratpeptidyl-L-cysteine S-palmitoylation involved_inISOZDHHC15 (Homo sapiens)1624291 PMID:18817523RGDPMID:18817523
Zdhhc15Ratpositive regulation of dendrite development involved_inIMP 25671406PMID:31189538UniProt 
Zdhhc15Ratprotein localization to membrane involved_inISOZDHHC15 (Homo sapiens)1624291 PMID:18817523RGDPMID:18817523
Zdhhc15Ratprotein localization to membrane involved_inISSUniProtKB:Q96MV81600115GO_REF:0000024UniProtGO_REF:0000024
Zdhhc15Ratprotein localization to postsynapse involved_inIMP 25671406PMID:31189538UniProt 
Zdhhc15Ratprotein palmitoylation involved_inISOZDHHC15 (Homo sapiens)1624291 PMID:23034182RGDPMID:23034182
Zdhhc15Ratprotein palmitoylation involved_inISOZdhhc15 (Mus musculus)1624291 PMID:18596047RGDPMID:18596047
Zdhhc15Ratprotein palmitoylation acts_upstream_of_or_withinISOZdhhc15 (Mus musculus)1624291 PMID:15603741RGDPMID:15603741
Zdhhc15Ratprotein targeting to Golgi apparatus involved_inISSUniProtKB:Q96MV81600115GO_REF:0000024UniProtGO_REF:0000024
Zdhhc15Ratprotein targeting to Golgi apparatus involved_inISOZDHHC15 (Homo sapiens)1624291 PMID:18817523RGDPMID:18817523
Zdhhc15Ratprotein targeting to membrane involved_inIBAPANTHER:PTN000525256 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Zdhhc15Ratregulation of dendritic spine morphogenesis involved_inIMP 25671406PMID:31189538UniProt 
Zdhhc15Ratsynaptic vesicle maturation involved_inIBAMGI:1915336 and PANTHER:PTN0018747201600115GO_REF:0000033GO_CentralGO_REF:0000033
Zdhhc15Ratsynaptic vesicle maturation acts_upstream_of_or_withinISOZdhhc15 (Mus musculus)1624291MGI:1277959 PMID:15603741RGDPMID:15603741
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Cellular Component
1 to 13 of 13 rows

  
Object Symbol
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Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zdhhc15Ratendoplasmic reticulum is_active_inIBAFB:FBgn0027453 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Zdhhc15RatGolgi apparatus located_inISOZDHHC15 (Homo sapiens)1624291 PMID:16647879RGDPMID:16647879
Zdhhc15RatGolgi apparatus is_active_inIBAFB:FBgn0031495 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Zdhhc15RatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
Zdhhc15RatGolgi apparatus located_inISOZdhhc15 (Mus musculus)1624291 PMID:18596047RGDPMID:18596047
Zdhhc15RatGolgi membrane located_inIDA 25671406PMID:31189538UniProt 
Zdhhc15RatGolgi membrane located_inIEAUniProtKB-SubCell:SL-01341600115GO_REF:0000044UniProtGO_REF:0000044
Zdhhc15RatGolgi membrane located_inISSUniProtKB:F1QXD31600115GO_REF:0000024UniProtGO_REF:0000024
Zdhhc15Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Zdhhc15Ratplasma membrane NOT|located_inIDA 25671406PMID:31189538UniProt 
Zdhhc15Ratpostsynapse located_inIDA 25671406PMID:31189538UniProt 
Zdhhc15Ratpostsynaptic density located_inIEAUniProtKB-SubCell:SL-02971600115GO_REF:0000044UniProtGO_REF:0000044
Zdhhc15Ratsynapse located_inIEAUniProtKB-KW:KW-07701600115GO_REF:0000043UniProtGO_REF:0000043
1 to 13 of 13 rows

Molecular Function
1 to 17 of 17 rows

  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
Zdhhc15Ratacyltransferase activity enablesIEAUniProtKB-KW:KW-00121600115GO_REF:0000043UniProtGO_REF:0000043
Zdhhc15Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Zdhhc15Ratpalmitoyltransferase activity enablesISOZDHHC15 (Homo sapiens)1624291 PMID:23034182RGDPMID:23034182
Zdhhc15Ratpalmitoyltransferase activity enablesIEAInterPro:IPR001594 and InterPro:IPR0398591600115GO_REF:0000002InterProGO_REF:0000002
Zdhhc15Ratpalmitoyltransferase activity enablesISOZdhhc15 (Mus musculus)1624291 PMID:15603741RGDPMID:15603741
Zdhhc15Ratprotein binding enablesISOZDHHC15 (Homo sapiens)1624291UniProtKB:A0A384ME17 more ...RGDPMID:32296183
Zdhhc15Ratprotein-cysteine S-myristoyltransferase activity enablesIEARHEA:597361600115GO_REF:0000116RHEAGO_REF:0000116
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesISOZdhhc15 (Mus musculus)1624291 PMID:15603741RGDPMID:15603741
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesIEARHEA:366831600115GO_REF:0000116RHEAGO_REF:0000116
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesIBAMGI:1913470 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesIEAEC:2.3.1.2251600115GO_REF:0000003UniProtGO_REF:0000003
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesISOZDHHC15 (Homo sapiens)1624291 PMID:18817523RGDPMID:18817523
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesISSUniProtKB:Q96MV81600115GO_REF:0000024UniProtGO_REF:0000024
Zdhhc15Ratprotein-cysteine S-palmitoyltransferase activity enablesISSUniProtKB:F1QXD31600115GO_REF:0000024UniProtGO_REF:0000024
Zdhhc15Ratprotein-cysteine S-stearoyltransferase activity enablesIEARHEA:597401600115GO_REF:0000116RHEAGO_REF:0000116
Zdhhc15Rattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
Zdhhc15Ratzinc ion binding enablesISSUniProtKB:F1QXD31600115GO_REF:0000024UniProtGO_REF:0000024
1 to 17 of 17 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Regulation of dendrite morphology and excitatory synapse formation by zDHHC15. Shah BS, etal., J Cell Sci. 2019 Jul 5;132(13). pii: jcs.230052. doi: 10.1242/jcs.230052.
PMID:12477932   PMID:15603741   PMID:16647879   PMID:18596047   PMID:18817523   PMID:23034182   PMID:23376485  



Zdhhc15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X73,633,977 - 73,767,451 (-)NCBIGRCr8
mRatBN7.2X69,568,086 - 69,701,756 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,574,124 - 69,701,756 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX71,083,209 - 71,210,844 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X74,583,502 - 74,711,138 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X72,144,696 - 72,272,344 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X75,433,957 - 75,566,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX75,439,778 - 75,566,481 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X76,236,346 - 76,364,662 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,568,201 - 92,700,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX70,927,489 - 71,054,488 (-)NCBICelera
Cytogenetic MapXq22NCBI
ZDHHC15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X75,368,427 - 75,523,037 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX75,368,427 - 75,523,502 (-)EnsemblGRCh38hg38GRCh38
GRCh37X74,588,262 - 74,742,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X74,508,786 - 74,659,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X74,375,081 - 74,525,896NCBI
CeleraX74,871,681 - 75,026,653 (-)NCBICelera
Cytogenetic MapXq13.3NCBI
HuRefX68,222,539 - 68,377,209 (-)NCBIHuRef
CHM1_1X74,481,166 - 74,636,183 (-)NCBICHM1_1
T2T-CHM13v2.0X73,802,127 - 73,956,714 (-)NCBIT2T-CHM13v2.0
Zdhhc15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,580,575 - 103,714,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,580,575 - 103,714,670 (-)EnsemblGRCm39 Ensembl
GRCm38X104,536,969 - 104,671,090 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,536,969 - 104,671,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X101,732,308 - 101,866,403 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,741,269 - 100,873,522 (-)NCBIMGSCv36mm8
CeleraX91,429,683 - 91,504,947 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX46.69NCBI
Zdhhc15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555621,466,897 - 1,588,681 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555621,468,373 - 1,588,298 (-)NCBIChiLan1.0ChiLan1.0
ZDHHC15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X75,059,201 - 75,176,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X75,090,493 - 75,179,609 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X64,624,908 - 64,777,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X74,737,281 - 74,889,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,737,281 - 74,889,055 (-)Ensemblpanpan1.1panPan2
ZDHHC15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X58,641,182 - 58,812,671 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX58,645,650 - 58,812,671 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX49,814,504 - 49,985,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X59,874,198 - 60,045,551 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX59,876,028 - 60,046,358 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X57,562,022 - 57,733,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X59,181,791 - 59,353,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X58,780,612 - 58,951,992 (-)NCBIUU_Cfam_GSD_1.0
Zdhhc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X43,370,733 - 43,464,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366831,482,950 - 1,577,702 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366831,482,968 - 1,576,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX60,485,565 - 60,584,784 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,485,559 - 60,585,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,861,681 - 68,944,080 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,906,439 - 65,063,936 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606716,553,342 - 16,793,539 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248365,194,177 - 5,400,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248365,193,710 - 5,404,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Zdhhc15
354 total Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
X 76289762 76289763 C G snv BDIX.Cg-Tal/NemOda (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:466
Count of miRNA genes:258
Interacting mature miRNAs:329
Transcripts:ENSRNOT00000003714
Prediction methods:Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 59 31



Ensembl Acc Id: ENSRNOT00000003714   ⟹   ENSRNOP00000003714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX69,574,124 - 69,701,756 (-)Ensembl
Rnor_6.0 EnsemblX75,439,778 - 75,566,481 (-)Ensembl
RefSeq Acc Id: NM_001039101   ⟹   NP_001034190
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X73,639,818 - 73,767,451 (-)NCBI
mRatBN7.2X69,574,123 - 69,701,756 (-)NCBI
Rnor_6.0X75,439,777 - 75,566,481 (-)NCBI
Rnor_5.0X76,236,346 - 76,364,662 (-)NCBI
RGSC_v3.4X92,568,201 - 92,700,448 (-)RGD
CeleraX70,927,489 - 71,054,488 (-)RGD
Sequence:
RefSeq Acc Id: XM_006257145   ⟹   XP_006257207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X73,633,977 - 73,767,399 (-)NCBI
mRatBN7.2X69,568,086 - 69,701,556 (-)NCBI
Rnor_6.0X75,433,957 - 75,566,531 (-)NCBI
Rnor_5.0X76,236,346 - 76,364,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099740   ⟹   XP_038955668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X73,637,301 - 73,745,307 (-)NCBI
mRatBN7.2X69,571,606 - 69,701,547 (-)NCBI
RefSeq Acc Id: XM_063280025   ⟹   XP_063136095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X73,637,301 - 73,745,075 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_001034190 (Get FASTA)   NCBI Sequence Viewer  
  XP_006257207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955668 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136095 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAX73393 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003714
  ENSRNOP00000003714.5
  ENSRNOP00000102726
GenBank Protein Q2TGJ4 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_001034190   ⟸   NM_001039101
- UniProtKB: Q2TGJ4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006257207   ⟸   XM_006257145
- Peptide Label: isoform X1
- UniProtKB: Q2TGJ4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003714   ⟸   ENSRNOT00000003714
RefSeq Acc Id: XP_038955668   ⟸   XM_039099740
- Peptide Label: isoform X2
- UniProtKB: A6IV19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136095   ⟸   XM_063280025
- Peptide Label: isoform X2
- UniProtKB: A6IV19 (UniProtKB/TrEMBL)
DHHC   Palmitoyltransferase DHHC

Name Modeler Protein Id AA Range Protein Structure
AF-Q2TGJ4-F1-model_v2 AlphaFold Q2TGJ4 1-337 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 16 of 16 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-1987 BioCyc
Ensembl Genes ENSRNOG00000002751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003714 ENTREZGENE
  ENSRNOT00000003714.6 UniProtKB/Swiss-Prot
  ENSRNOT00000150380 ENTREZGENE
InterPro Palmitoyltrfase_DHHC UniProtKB/Swiss-Prot
  PFA4/ZDH16/20/ERF2-like UniProtKB/Swiss-Prot
KEGG Report rno:317235 UniProtKB/Swiss-Prot
NCBI Gene 317235 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC16 UniProtKB/Swiss-Prot
Pfam DHHC UniProtKB/Swiss-Prot
PhenoGen Zdhhc15 PhenoGen
PROSITE DHHC UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002751 RatGTEx
UniProt A6IV19 ENTREZGENE, UniProtKB/TrEMBL
  Q2TGJ4 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Zdhhc15  zinc finger DHHC-type palmitoyltransferase 15  Zdhhc15  zinc finger, DHHC-type containing 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Zdhhc15  zinc finger, DHHC-type containing 15  Zdhhc15  zinc finger, DHHC domain containing 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Zdhhc15  zinc finger, DHHC domain containing 15  LOC317235  membrane-associated DHHC15 zinc finger protein  Symbol and Name updated 1299863 APPROVED
2006-02-09 LOC317235  membrane-associated DHHC15 zinc finger protein      Symbol and Name status set to provisional 70820 PROVISIONAL