Zdhhc15 (zinc finger, DHHC domain containing 15) - Rat Genome Database

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Gene: Zdhhc15 (zinc finger, DHHC domain containing 15) Mus musculus
Analyze
Symbol: Zdhhc15
Name: zinc finger, DHHC domain containing 15
RGD ID: 1558080
MGI Page MGI
Description: Enables protein-cysteine S-palmitoyltransferase activity. Involved in peptidyl-L-cysteine S-palmitoylation. Acts upstream of or within establishment of protein localization and synaptic vesicle maturation. Located in Golgi apparatus. Is expressed in eye. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 91. Orthologous to human ZDHHC15 (zinc finger DHHC-type palmitoyltransferase 15).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030457O13Rik; acyltransferase ZDHHC15; DHHC-15; palmitoyltransferase ZDHHC15; zinc finger DHHC domain-containing protein 15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,580,575 - 103,714,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,580,575 - 103,714,670 (-)EnsemblGRCm39 Ensembl
GRCm38X104,536,969 - 104,671,090 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,536,969 - 104,671,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X101,732,308 - 101,866,403 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,741,269 - 100,873,522 (-)NCBIMGSCv36mm8
CeleraX91,429,683 - 91,504,947 (-)NCBICelera
Cytogenetic MapXDNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Identification of PSD-95 palmitoylating enzymes. Fukata M, etal., Neuron 2004 Dec 16;44(6):987-96.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15618518   PMID:16141072   PMID:16141073   PMID:18425126   PMID:18596047   PMID:18799693  
PMID:20059953   PMID:20211142   PMID:20548051   PMID:21267068   PMID:21873635   PMID:23754746   PMID:26073538   PMID:28167757  


Genomics

Comparative Map Data
Zdhhc15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,580,575 - 103,714,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX103,580,575 - 103,714,670 (-)EnsemblGRCm39 Ensembl
GRCm38X104,536,969 - 104,671,090 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,536,969 - 104,671,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X101,732,308 - 101,866,403 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X100,741,269 - 100,873,522 (-)NCBIMGSCv36mm8
CeleraX91,429,683 - 91,504,947 (-)NCBICelera
Cytogenetic MapXDNCBI
ZDHHC15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X75,368,427 - 75,523,037 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX75,368,427 - 75,523,502 (-)EnsemblGRCh38hg38GRCh38
GRCh37X74,588,262 - 74,742,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X74,508,786 - 74,659,600 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X74,375,081 - 74,525,896NCBI
CeleraX74,871,681 - 75,026,653 (-)NCBICelera
Cytogenetic MapXq13.3NCBI
HuRefX68,222,539 - 68,377,209 (-)NCBIHuRef
CHM1_1X74,481,166 - 74,636,183 (-)NCBICHM1_1
T2T-CHM13v2.0X73,802,127 - 73,956,714 (-)NCBIT2T-CHM13v2.0
Zdhhc15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X69,568,086 - 69,701,756 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,574,124 - 69,701,756 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX71,083,209 - 71,210,844 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X74,583,502 - 74,711,138 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X72,144,696 - 72,272,344 (-)NCBIRnor_WKY
Rnor_6.0X75,433,957 - 75,566,531 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX75,439,778 - 75,566,481 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X76,236,346 - 76,364,662 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,568,201 - 92,700,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX70,927,489 - 71,054,488 (-)NCBICelera
Cytogenetic MapXq22NCBI
Zdhhc15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555621,466,897 - 1,588,681 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555621,468,373 - 1,588,298 (-)NCBIChiLan1.0ChiLan1.0
ZDHHC15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X74,737,281 - 74,889,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,737,281 - 74,889,055 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X64,624,908 - 64,777,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZDHHC15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X58,641,182 - 58,812,671 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX58,645,650 - 58,812,671 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX49,814,504 - 49,985,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X59,874,198 - 60,045,551 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX59,876,028 - 60,046,358 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X57,562,022 - 57,733,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X59,181,791 - 59,353,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X58,780,612 - 58,951,992 (-)NCBIUU_Cfam_GSD_1.0
Zdhhc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X43,370,733 - 43,464,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366831,482,950 - 1,577,702 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049366831,482,968 - 1,576,969 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX60,485,565 - 60,584,784 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,485,559 - 60,585,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,861,681 - 68,944,080 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,906,439 - 65,063,936 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606716,553,342 - 16,793,539 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248365,194,177 - 5,400,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248365,193,710 - 5,404,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1582
Count of miRNA genes:673
Interacting mature miRNAs:898
Transcripts:ENSMUST00000042070
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse

Markers in Region
RH127067  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,664,288 - 104,664,492UniSTSGRCm38
MGSCv37X101,859,627 - 101,859,831UniSTSGRCm37
CeleraX91,553,421 - 91,553,627UniSTS
Cytogenetic MapXDUniSTS
Whitehead/MRC_RHX1174.83UniSTS
px-44a10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,539,699 - 104,539,982UniSTSGRCm38
MGSCv37X101,735,038 - 101,735,321UniSTSGRCm37
CeleraX91,432,413 - 91,432,696UniSTS
Cytogenetic MapXDUniSTS
px-8h4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,563,104 - 104,563,486UniSTSGRCm38
MGSCv37X101,758,443 - 101,758,825UniSTSGRCm37
CeleraX91,455,900 - 91,456,282UniSTS
Cytogenetic MapXDUniSTS
px-13h8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,638,458 - 104,638,593UniSTSGRCm38
MGSCv37X101,833,797 - 101,833,932UniSTSGRCm37
Cytogenetic MapXDUniSTS
px-19d1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X104,638,400 - 104,638,573UniSTSGRCm38
MGSCv37X101,833,739 - 101,833,912UniSTSGRCm37
Cytogenetic MapXDUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK029137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL808022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY652237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000042070   ⟹   ENSMUSP00000047615
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX103,580,575 - 103,714,670 (-)Ensembl
GRCm38.p6 EnsemblX104,536,969 - 104,671,064 (-)Ensembl
RefSeq Acc Id: NM_175358   ⟹   NP_780567
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,580,575 - 103,714,670 (-)NCBI
GRCm38X104,536,969 - 104,671,064 (-)NCBI
MGSCv37X101,732,308 - 101,866,403 (-)RGD
CeleraX91,429,683 - 91,504,947 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011247505   ⟹   XP_011245807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,580,575 - 103,714,696 (-)NCBI
GRCm38X104,536,969 - 104,671,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247506   ⟹   XP_011245808
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,580,575 - 103,714,696 (-)NCBI
GRCm38X104,536,969 - 104,671,090 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017318342   ⟹   XP_017173831
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,580,575 - 103,714,404 (-)NCBI
GRCm38X104,536,969 - 104,670,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161772   ⟹   XP_036017665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,592,158 - 103,714,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161773   ⟹   XP_036017666
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,592,158 - 103,714,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161774   ⟹   XP_036017667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X103,580,575 - 103,714,404 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_780567   ⟸   NM_175358
- UniProtKB: Q8BMB7 (UniProtKB/Swiss-Prot),   Q8BGJ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011245808   ⟸   XM_011247506
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011245807   ⟸   XM_011247505
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017173831   ⟸   XM_017318342
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSMUSP00000047615   ⟸   ENSMUST00000042070
RefSeq Acc Id: XP_036017667   ⟸   XM_036161774
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036017666   ⟸   XM_036161773
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036017665   ⟸   XM_036161772
- Peptide Label: isoform X3
Protein Domains
DHHC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGJ0-F1-model_v2 AlphaFold Q8BGJ0 1-337 view protein structure

Promoters
RGD ID:6846537
Promoter ID:MM_KWN:61469
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   ES_Cell
Transcripts:OTTMUST00000043702
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X101,865,924 - 101,866,424 (-)MPROMDB
RGD ID:13681154
Promoter ID:EPDNEW_M24726
Type:multiple initiation site
Name:Zdhhc15_1
Description:Mus musculus zinc finger, DHHC domain containing 15 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X104,671,064 - 104,671,124EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915336 AgrOrtholog
Ensembl Genes ENSMUSG00000033906 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000047615 ENTREZGENE
  ENSMUSP00000047615.6 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000042070 ENTREZGENE
  ENSMUST00000042070.6 UniProtKB/Swiss-Prot
InterPro Palmitoyltrfase_DHHC UniProtKB/Swiss-Prot
KEGG Report mmu:108672 UniProtKB/Swiss-Prot
MGD MGI:1915336 ENTREZGENE
NCBI Gene 108672 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC15 UniProtKB/Swiss-Prot
  ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam DHHC UniProtKB/Swiss-Prot
PhenoGen Zdhhc15 PhenoGen
PROSITE DHHC UniProtKB/Swiss-Prot
UniProt Q8BGJ0 ENTREZGENE
  Q8BMB7 ENTREZGENE
  ZDH15_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TV63 UniProtKB/Swiss-Prot
  Q8BMB7 UniProtKB/Swiss-Prot