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Gene: Sox3 (SRY-box transcription factor 3) Rattus norvegicus
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Symbol: Sox3
Name: SRY-box transcription factor 3
Description: Predicted to have RNA polymerase II core promoter sequence-specific DNA binding activity and transcription corepressor activity. Predicted to be involved in several processes, including animal organ development; face development; and spermatid differentiation. Predicted to localize to the nucleoplasm. Orthologous to human SOX3 (SRY-box transcription factor 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; (+)-catechin (ortholog); 17beta-estradiol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC679158; LOW QUALITY PROTEIN: transcription factor SOX-3; similar to SRY (sex determining region Y)-box 3; SRY-box 3; SRY-box containing gene 3; transcription factor SOX-3
Orthologs:
Homo sapiens (human) : SOX3 (SRY-box transcription factor 3)  HGNC  Alliance
Mus musculus (house mouse) : Sox3 (SRY (sex determining region Y)-box 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sox3 (SRY-box transcription factor 3)
Canis lupus familiaris (dog) : SOX3 (SRY-box transcription factor 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sox3 (SRY-box transcription factor 3)
Sus scrofa (pig) : SOX3 (SRY-box transcription factor 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X144,035,162 - 144,037,364 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX144,035,883 - 144,037,294 (-)Ensembl
Rnor_5.0X144,060,911 - 144,062,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X146,510,409 - 146,511,936 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX135,369,404 - 135,371,527 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sox3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1591839
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.