Or11q2 (olfactory receptor family 11 subfamily Q member 2) - Rat Genome Database

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Gene: Or11q2 (olfactory receptor family 11 subfamily Q member 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or11q2
Name: olfactory receptor family 11 subfamily Q member 2
RGD ID: 1332660
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1320; olfactory receptor pseudogene 1764; Olfr1320; Olr1764-ps
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X133,870,576 - 133,871,735 (+)NCBIGRCr8
mRatBN7.2X128,992,754 - 128,993,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX128,992,854 - 128,993,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX131,112,213 - 131,113,372 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X134,689,256 - 134,690,415 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X132,209,633 - 132,210,792 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X136,715,598 - 136,716,557 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX136,715,598 - 136,716,557 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0X136,777,361 - 136,778,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X136,213,896 - 136,214,859 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X136,287,228 - 136,288,392 (+)NCBI
CeleraX127,921,956 - 127,922,915 (+)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.

Genomics

Variants

.
Variants in Or11q2
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000040628   ⟹   ENSRNOP00000064309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX128,992,854 - 128,993,813 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000064309.1
Ensembl Acc Id: ENSRNOP00000064309   ⟸   ENSRNOT00000040628
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4M2-F1-model_v2 AlphaFold M0R4M2 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1332660 AgrOrtholog
BioCyc Gene G2FUF-1115 BioCyc
Ensembl Genes ENSRNOG00000033413 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040628.4 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR UniProtKB/TrEMBL
NCBI Gene 405229 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or11q2 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033413 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt M0R4M2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or11q2  olfactory receptor family 11 subfamily Q member 2  Olr1764-ps  olfactory receptor pseudogene 1764  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Olr1764-ps  olfactory receptor pseudogene 1764  Olr1764-ps  olfactory receptor pseudogene 1764  Data merged from RGD:15004032 737654 PROVISIONAL
2022-01-06 Olr1764-ps  olfactory receptor pseudogene 1764  Olfr1320  olfactory receptor 1320  Symbol and/or name change 19259462 PROVISIONAL
2019-11-08 Olfr1320  olfactory receptor 1320      Symbol and Name status set to provisional 45752 PROVISIONAL
2005-02-04 Olr1764-ps  olfactory receptor pseudogene 1764      Symbol and Name status set to approved 70820 APPROVED