LOC120099413 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120099413 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120099413
Name: U6 spliceosomal RNA
RGD ID: 41182840
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,997,384 - 104,997,486 (-)NCBIGRCr8
mRatBN7.2X100,205,102 - 100,205,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,205,102 - 100,205,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX107,515,422 - 107,515,524 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120099413
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,997,384 - 104,997,486 (-)NCBIGRCr8
mRatBN7.2X100,205,102 - 100,205,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,205,102 - 100,205,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 EnsemblX107,515,422 - 107,515,524 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic MapXq32NCBI
RNU6-879P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,415,296 - 57,415,403 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,415,296 - 57,415,403 (+)EnsemblGRCh38hg38GRCh38
GRCh371257,809,079 - 57,809,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q13.3NCBI
CHM1_11257,777,232 - 57,777,339 (+)NCBICHM1_1
T2T-CHM13v2.01257,383,561 - 57,383,668 (+)NCBIT2T-CHM13v2.0
Gm25039
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39386,291,554 - 86,291,660 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl386,291,554 - 86,291,660 (+)EnsemblGRCm39 Ensembl
GRCm38386,384,247 - 86,384,353 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl386,384,247 - 86,384,353 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3F1NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005498601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000078141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX100,205,102 - 100,205,204 (-)Ensembl
RefSeq Acc Id: XR_005498601
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,997,384 - 104,997,486 (-)NCBI
mRatBN7.2X100,205,102 - 100,205,204 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1606 BioCyc
Ensembl Genes ENSRNOG00000058350 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000078141 ENTREZGENE
NCBI Gene LOC120099413 ENTREZGENE
PhenoGen LOC120099413 PhenoGen
RatGTEx ENSRNOG00000058350 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120099413  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15011719 737654 PROVISIONAL
2021-01-27 LOC120099413  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL