Hnrnph2 (heterogeneous nuclear ribonucleoprotein H2) - Rat Genome Database

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Gene: Hnrnph2 (heterogeneous nuclear ribonucleoprotein H2) Rattus norvegicus
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Symbol: Hnrnph2
Name: heterogeneous nuclear ribonucleoprotein H2
RGD ID: 1549784
Description: Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Is active in postsynaptic density. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual developmental disorder bain type. Orthologous to human HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; ampicillin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heterogeneous nuclear ribonucleoprotein H'; heterogeneous nuclear ribonucleoprotein H2 (H'); hnRNP H'; hnRNP H2; Hnrph2; LOC308650; similar to Murine homolog of human ftp-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X102,074,175 - 102,080,115 (+)NCBIGRCr8
mRatBN7.2X97,780,890 - 97,786,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX97,780,785 - 97,787,041 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX99,455,194 - 99,460,391 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X102,965,912 - 102,971,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X100,468,344 - 100,473,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X105,417,603 - 105,423,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,419,285 - 105,422,861 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X105,306,966 - 105,312,885 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X122,056,647 - 122,061,844 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX98,821,521 - 98,826,703 (+)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 14 of 14 rows
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Original Reference(s)
Hnrnph2Ratautistic disorder  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Hnrnph2Ratautosomal hemophilia A  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Hnrnph2Ratdevelopmental and epileptic encephalopathy 9  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 9ClinVarPMID:28492532
Hnrnph2Ratdilated cardiomyopathy  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Dilated Cardiomyopathy and RecessiveClinVarPMID:20308327 more ...
Hnrnph2Ratdilated cardiomyopathy  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Dilated CardiomyopathyClinVarPMID:25741868 more ...
Hnrnph2RatFabry disease  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Fabry diseaseClinVarPMID:10666480 more ...
Hnrnph2Ratfactor VIII deficiency  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Hnrnph2Ratgenetic disease  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:20308327 more ...
Hnrnph2RatGitelman syndrome  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial hypokalemia-hypomagnesemiaClinVarPMID:25741868 more ...
Hnrnph2Ratisolated growth hormone deficiency type III  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: X-linked agammaglobulinemia with growth hormone deficiencyClinVarPMID:10666480 more ...
Hnrnph2RatNeurodevelopmental Disorders  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:20308327 more ...
Hnrnph2Ratstereotypic movement disorder  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Stereotypic movement disorderClinVarPMID:20308327 more ...
Hnrnph2Ratsyndromic X-linked intellectual developmental disorder Bain type  ISOHNRNPH2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:20308327 more ...
Hnrnph2Ratsyndromic X-linked intellectual disability Lubs type  ISOHNRNPH2 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
1 to 14 of 14 rows
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Original Reference(s)
Hnrnph2Ratsyndromic X-linked intellectual developmental disorder Bain type  ISSHnrnph2 (Mus musculus)13592920OMIM:300986MouseDO 
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Original Reference(s)
Hnrnph2Ratsyndromic X-linked intellectual developmental disorder Bain type  ISOHNRNPH2 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Hnrnph2Rat(+)-catechin multiple interactionsISOHNRNPH2 (Homo sapiens)6480464[Catechin co-treated with Grape Seed Proanthocyanidins] results in increased expression of HNRNPH2 mRNACTDPMID:24763279
Hnrnph2Rat(1->4)-beta-D-glucan multiple interactionsISOHnrnph2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of HNRNPH2 mRNACTDPMID:36331819
Hnrnph2Rat(S)-nicotine increases expressionISOHnrnph2 (Mus musculus)6480464Nicotine results in increased expression of HNRNPH2 mRNACTDPMID:17456735
Hnrnph2Rat1,2-dimethylhydrazine decreases expressionISOHnrnph2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of HNRNPH2 mRNACTDPMID:22206623
Hnrnph2Rat1,2-dimethylhydrazine multiple interactionsISOHnrnph2 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of HNRNPH2 mRNACTDPMID:22206623
Hnrnph2Rat17alpha-ethynylestradiol affects expressionISOHnrnph2 (Mus musculus)6480464Ethinyl Estradiol affects the expression of HNRNPH2 mRNACTDPMID:17555576
Hnrnph2Rat17alpha-ethynylestradiol increases expressionISOHnrnph2 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of HNRNPH2 mRNACTDPMID:17942748
Hnrnph2Rat17beta-estradiol increases expressionISOHnrnph2 (Mus musculus)6480464Estradiol results in increased expression of HNRNPH2 mRNACTDPMID:39298647
Hnrnph2Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one decreases expressionISOHNRNPH2 (Homo sapiens)6480464Metribolone results in decreased expression of HNRNPH2 proteinCTDPMID:17152098
Hnrnph2Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOHnrnph2 (Mus musculus)64804642 more ...CTDPMID:30294300
Hnrnph2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOHNRNPH2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of HNRNPH2 mRNACTDPMID:19684285
Hnrnph2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of HNRNPH2 mRNACTDPMID:33387578
Hnrnph2Rat2,6-dimethoxyphenol multiple interactionsISOHNRNPH2 (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of and affects the localization of HNRNPH2 proteinCTDPMID:38598786
Hnrnph2Rat2-amino-14,16-dimethyloctadecan-3-ol decreases expressionISOHNRNPH2 (Homo sapiens)64804642-amino-14 and 16-dimethyloctadecan-3-ol results in decreased expression of HNRNPH2 proteinCTDPMID:32044396
Hnrnph2Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOHNRNPH2 (Homo sapiens)6480464tetrabromobisphenol A results in decreased expression of HNRNPH2 proteinCTDPMID:31675489
Hnrnph2Rat4,4'-sulfonyldiphenol increases expressionISOHnrnph2 (Mus musculus)6480464bisphenol S results in increased expression of HNRNPH2 mRNACTDPMID:39298647
Hnrnph2Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of HNRNPH2 mRNACTDPMID:36041667
Hnrnph2Rat4,4'-sulfonyldiphenol increases expressionISOHNRNPH2 (Homo sapiens)6480464bisphenol S results in increased expression of HNRNPH2 proteinCTDPMID:34186270
Hnrnph2Ratall-trans-retinoic acid multiple interactionsISOHNRNPH2 (Homo sapiens)6480464[Tretinoin co-treated with Tamoxifen] results in increased expression of HNRNPH2 proteinCTDPMID:17098229
Hnrnph2Ratall-trans-retinoic acid increases expressionISOHNRNPH2 (Homo sapiens)6480464Tretinoin results in increased expression of HNRNPH2 proteinCTDPMID:17098229

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Biological Process

  
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Original Reference(s)
Hnrnph2Ratregulation of RNA splicing involved_inIBAFB:FBgn0023441 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component
1 to 11 of 11 rows

  
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Original Reference(s)
Hnrnph2Ratcytosol located_inISOHNRNPH2 (Homo sapiens)1624291 RGDGO_REF:0000052
Hnrnph2Ratnucleoplasm located_inIEAUniProtKB-SubCell:SL-01901600115GO_REF:0000044UniProtGO_REF:0000044
Hnrnph2Ratnucleoplasm is_active_inIBAPANTHER:PTN000360053 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Hnrnph2Ratnucleoplasm located_inISOHNRNPH2 (Homo sapiens)1624291 PMID:24644279RGDGO_REF:0000052 and PMID:24644279
Hnrnph2Ratnucleoplasm located_inISSUniProtKB:P557951600115GO_REF:0000024UniProtGO_REF:0000024
Hnrnph2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Hnrnph2Ratpostsynaptic density is_active_inIDA 13702402PMID:14532281SynGO 
Hnrnph2Ratpostsynaptic density is_active_inEXP 13702402PMID:14532281SynGO 
Hnrnph2Ratribonucleoprotein complex part_ofISOHNRNPH2 (Homo sapiens)1624291 PMID:18809582RGDPMID:18809582
Hnrnph2Ratribonucleoprotein complex part_ofIBAPANTHER:PTN000359854 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Hnrnph2Ratribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-06871600115GO_REF:0000043UniProtGO_REF:0000043
1 to 11 of 11 rows

Molecular Function

  
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Original Reference(s)
Hnrnph2Ratnucleic acid binding enablesIEAInterPro:IPR0359791600115GO_REF:0000002InterProGO_REF:0000002
Hnrnph2Ratprotein binding enablesISOHNRNPH2 (Homo sapiens)1624291UniProtKB:O00192 more ...RGDPMID:24644279 more ...
Hnrnph2RatRNA binding enablesIEAUniRule:UR0004146191600115GO_REF:0000104UniProtGO_REF:0000104
Hnrnph2RatRNA binding enablesIEAInterPro:IPR0005041600115GO_REF:0000002InterProGO_REF:0000002
Hnrnph2RatRNA binding enablesIEAUniProtKB-KW:KW-06941600115GO_REF:0000043UniProtGO_REF:0000043
Hnrnph2RatRNA binding enablesIBAFB:FBgn0023441 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Proteomics analysis of rat brain postsynaptic density. Implications of the diverse protein functional groups for the integration of synaptic physiology. Li KW, etal., J Biol Chem. 2004 Jan 9;279(2):987-1002. doi: 10.1074/jbc.M303116200. Epub 2003 Oct 7.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:15489334   PMID:16641100   PMID:18573884   PMID:18809582   PMID:19946888   PMID:22082260   PMID:22658674   PMID:22681889   PMID:25931508   PMID:26316108   PMID:27117401   PMID:29476059  



Hnrnph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X102,074,175 - 102,080,115 (+)NCBIGRCr8
mRatBN7.2X97,780,890 - 97,786,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX97,780,785 - 97,787,041 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX99,455,194 - 99,460,391 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X102,965,912 - 102,971,108 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X100,468,344 - 100,473,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X105,417,603 - 105,423,531 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,419,285 - 105,422,861 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X105,306,966 - 105,312,885 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X122,056,647 - 122,061,844 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX98,821,521 - 98,826,703 (+)NCBICelera
Cytogenetic MapXq32NCBI
HNRNPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,408,222 - 101,414,133 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,408,222 - 101,414,133 (+)EnsemblGRCh38hg38GRCh38
GRCh37X100,663,210 - 100,669,121 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,549,847 - 100,555,777 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX101,182,649 - 101,188,579 (+)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,469,009 - 90,475,016 (+)NCBIHuRef
CHM1_1X100,556,599 - 100,562,666 (+)NCBICHM1_1
T2T-CHM13v2.0X99,852,337 - 99,858,248 (+)NCBIT2T-CHM13v2.0
Hnrnph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,501,928 - 133,507,809 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,501,928 - 133,507,809 (+)EnsemblGRCm39 Ensembl
GRCm38X134,601,179 - 134,607,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,601,179 - 134,607,060 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X131,135,825 - 131,141,593 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X129,947,636 - 129,953,404 (+)NCBIMGSCv36mm8
CeleraX117,480,851 - 117,486,629 (+)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.2NCBI
Hnrnph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555037,535,987 - 7,541,622 (+)NCBIChiLan1.0ChiLan1.0
HNRNPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X101,007,512 - 101,013,500 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X101,011,117 - 101,017,105 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X90,610,742 - 90,616,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X100,742,447 - 100,748,378 (+)NCBIpanpan1.1PanPan1.1panPan2
HNRNPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X75,320,505 - 75,326,651 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX75,324,481 - 75,325,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X76,740,722 - 76,746,875 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX76,740,762 - 76,746,875 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X74,305,044 - 74,311,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X75,965,257 - 75,971,411 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X75,727,676 - 75,733,831 (+)NCBIUU_Cfam_GSD_1.0
Hnrnph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X62,984,483 - 62,990,212 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936813484,872 - 490,615 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936813484,872 - 489,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX83,032,621 - 83,038,361 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X83,032,525 - 83,038,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HNRNPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X89,749,841 - 89,756,006 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX89,753,866 - 89,755,215 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606514,667,693 - 14,673,877 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249021,157,752 - 1,163,281 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249021,157,747 - 1,163,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Hnrnph2
11 total Variants

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:29
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000015518
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

Hnrph2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X97,784,877 - 97,785,537 (+)MAPPERmRatBN7.2
Rnor_6.0X105,421,563 - 105,422,222NCBIRnor6.0
Rnor_5.0X105,310,917 - 105,311,576UniSTSRnor5.0
RGSC_v3.4X122,060,545 - 122,061,204UniSTSRGSC3.4
CeleraX98,825,404 - 98,826,063UniSTS
Cytogenetic MapXq34UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000015518   ⟹   ENSRNOP00000015518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX97,780,785 - 97,787,041 (+)Ensembl
Rnor_6.0 EnsemblX105,419,285 - 105,422,861 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096902   ⟹   ENSRNOP00000089581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX97,781,270 - 97,786,841 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119849   ⟹   ENSRNOP00000096745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX97,780,936 - 97,787,041 (+)Ensembl
RefSeq Acc Id: NM_001014019   ⟹   NP_001014041
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,074,249 - 102,079,446 (+)NCBI
mRatBN7.2X97,780,980 - 97,786,177 (+)NCBI
Rnor_6.0X105,417,665 - 105,422,862 (+)NCBI
Rnor_5.0X105,306,966 - 105,312,885 (+)NCBI
RGSC_v3.4X122,056,647 - 122,061,844 (+)RGD
CeleraX98,821,521 - 98,826,703 (+)RGD
Sequence:
RefSeq Acc Id: XM_006257219   ⟹   XP_006257281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,074,188 - 102,080,115 (+)NCBI
mRatBN7.2X97,780,922 - 97,786,846 (+)NCBI
Rnor_6.0X105,417,609 - 105,423,531 (+)NCBI
Rnor_5.0X105,306,966 - 105,312,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006257220   ⟹   XP_006257282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,074,175 - 102,080,115 (+)NCBI
mRatBN7.2X97,780,890 - 97,786,846 (+)NCBI
Rnor_6.0X105,417,603 - 105,423,531 (+)NCBI
Rnor_5.0X105,306,966 - 105,312,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006257221   ⟹   XP_006257283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,074,211 - 102,080,115 (+)NCBI
mRatBN7.2X97,780,921 - 97,786,846 (+)NCBI
Rnor_6.0X105,417,609 - 105,423,531 (+)NCBI
Rnor_5.0X105,306,966 - 105,312,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063279968   ⟹   XP_063136038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X102,074,175 - 102,080,115 (+)NCBI
RefSeq Acc Id: NP_001014041   ⟸   NM_001014019
- UniProtKB: Q6AY09 (UniProtKB/Swiss-Prot),   A6IVG4 (UniProtKB/TrEMBL),   G3V9Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257282   ⟸   XM_006257220
- Peptide Label: isoform X1
- UniProtKB: Q6AY09 (UniProtKB/Swiss-Prot),   A6IVG4 (UniProtKB/TrEMBL),   G3V9Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257281   ⟸   XM_006257219
- Peptide Label: isoform X1
- UniProtKB: Q6AY09 (UniProtKB/Swiss-Prot),   A6IVG4 (UniProtKB/TrEMBL),   G3V9Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257283   ⟸   XM_006257221
- Peptide Label: isoform X1
- UniProtKB: Q6AY09 (UniProtKB/Swiss-Prot),   A6IVG4 (UniProtKB/TrEMBL),   G3V9Q3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015518   ⟸   ENSRNOT00000015518
RRM

Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY09-F1-model_v2 AlphaFold Q6AY09 1-449 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-1679 BioCyc
Ensembl Genes ENSRNOG00000011661 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015518 ENTREZGENE
  ENSRNOT00000015518.5 UniProtKB/Swiss-Prot
  ENSRNOT00000096902.1 UniProtKB/Swiss-Prot
  ENSRNOT00000119849 ENTREZGENE
  ENSRNOT00000119849.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132657 IMAGE-MGC_LOAD
InterPro ESRP UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  Znf_CHHC UniProtKB/Swiss-Prot
KEGG Report rno:308650 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94322 IMAGE-MGC_LOAD
NCBI Gene 308650 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
  zf-RNPHF UniProtKB/Swiss-Prot
PhenoGen Hnrnph2 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003399 RatGTEx
  ENSRNOG00000011661 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A6IVG4 ENTREZGENE, UniProtKB/TrEMBL
  G3V9Q3 ENTREZGENE, UniProtKB/TrEMBL
  HNRH2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 Hnrnph2  heterogeneous nuclear ribonucleoprotein H2  Hnrnph2  heterogeneous nuclear ribonucleoprotein H2 (H')  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Hnrnph2  heterogeneous nuclear ribonucleoprotein H2 (H')  Hnrnph2  heterogeneous nuclear ribonucleoprotein H2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-19 Hnrnph2  heterogeneous nuclear ribonucleoprotein H2  Hnrph2  heterogeneous nuclear ribonucleoprotein H2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Hnrph2  heterogeneous nuclear ribonucleoprotein H2  LOC308650  similar to Murine homolog of human ftp-3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-15 LOC308650  similar to Murine homolog of human ftp-3      Symbol and Name status set to provisional 70820 PROVISIONAL