Steep1 (STING1 ER exit protein 1) - Rat Genome Database

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Gene: Steep1 (STING1 ER exit protein 1) Rattus norvegicus
Analyze
Symbol: Steep1
Name: STING1 ER exit protein 1
RGD ID: 1564541
Description: Predicted to be involved in endoplasmic reticulum membrane organization and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in cell body; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 107. Orthologous to human STEEP1 (STING1 ER exit protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC313433; LOC313433; RGD1564541; similar to hypothetical protein FLJ22965; uncharacterized protein LOC313433; UPF0428 protein CXorf56 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X116,087,626 - 116,114,159 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX116,060,929 - 116,114,159 (-)Ensembl
Rnor_6.0X123,460,280 - 123,486,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,460,280 - 123,486,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X123,605,221 - 123,631,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X7,992,595 - 8,019,120 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX115,317,375 - 115,344,394 (-)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell body  (ISO)
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:29374277  


Genomics

Comparative Map Data
Steep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X116,087,626 - 116,114,159 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX116,060,929 - 116,114,159 (-)Ensembl
Rnor_6.0X123,460,280 - 123,486,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,460,280 - 123,486,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X123,605,221 - 123,631,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X7,992,595 - 8,019,120 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX115,317,375 - 115,344,394 (-)NCBICelera
Cytogenetic MapXq35NCBI
STEEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X119,538,149 - 119,565,409 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX119,538,149 - 119,565,409 (-)EnsemblGRCh38hg38GRCh38
GRCh37X118,672,112 - 118,699,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X118,557,529 - 118,583,392 (-)NCBINCBI36hg18NCBI36
CeleraX119,126,840 - 119,154,108 (-)NCBI
Cytogenetic MapXq24NCBI
HuRefX108,165,833 - 108,192,856 (-)NCBIHuRef
CHM1_1X118,583,359 - 118,610,624 (-)NCBICHM1_1
Steep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X36,087,388 - 36,127,956 (-)NCBIGRCm39mm39
GRCm39 EnsemblX36,087,390 - 36,137,764 (-)Ensembl
GRCm38X36,827,161 - 36,864,303 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX36,823,737 - 36,874,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X34,388,538 - 34,404,241 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X33,255,180 - 33,305,588 (-)NCBImm8
CeleraX23,572,190 - 23,587,885 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
Steep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955534429,029 - 476,987 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955534429,207 - 443,810 (+)NCBIChiLan1.0ChiLan1.0
STEEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X118,997,850 - 119,024,661 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX118,997,850 - 119,024,661 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X108,570,634 - 108,598,045 (-)NCBIMhudiblu_PPA_v0panPan3
STEEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X91,573,392 - 91,598,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX91,575,882 - 91,598,425 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX77,648,136 - 77,673,310 (-)NCBI
ROS_Cfam_1.0X93,312,436 - 93,337,629 (-)NCBI
ROS_Cfam_1.0 EnsemblX93,312,910 - 93,337,616 (-)Ensembl
UMICH_Zoey_3.1X90,765,359 - 90,790,317 (-)NCBI
UNSW_CanFamBas_1.0X92,523,931 - 92,549,044 (-)NCBI
UU_Cfam_GSD_1.0X92,253,041 - 92,278,233 (-)NCBI
Steep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X90,612,443 - 90,636,476 (-)NCBI
SpeTri2.0NW_00493647910,351,016 - 10,373,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STEEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX97,974,600 - 97,986,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X97,974,596 - 97,986,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X113,678,599 - 113,690,302 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STEEP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606532,291,932 - 32,316,567 (-)NCBIVero_WHO_p1.0
Steep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248953,522,085 - 3,535,934 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH130940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,087,909 - 116,088,106 (+)MAPPERmRatBN7.2
Rnor_6.0X123,460,564 - 123,460,760NCBIRnor6.0
Rnor_5.0X123,605,505 - 123,605,701UniSTSRnor5.0
RGSC_v3.4X8,018,640 - 8,018,836UniSTSRGSC3.4
CeleraX115,317,659 - 115,317,855UniSTS
Cytogenetic MapXq12UniSTS
RH126553  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,088,325 - 116,088,574 (+)MAPPERmRatBN7.2
Rnor_6.0X123,460,980 - 123,461,228NCBIRnor6.0
Rnor_5.0X123,605,921 - 123,606,169UniSTSRnor5.0
RGSC_v3.4X8,018,172 - 8,018,420UniSTSRGSC3.4
CeleraX115,318,075 - 115,318,323UniSTS
Cytogenetic MapXq12UniSTS
MARC_21759-21760:1023907404:5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,091,612 - 116,092,364 (+)MAPPERmRatBN7.2
Rnor_6.0X123,464,266 - 123,465,017NCBIRnor6.0
Rnor_5.0X123,609,207 - 123,609,958UniSTSRnor5.0
RGSC_v3.4X8,014,383 - 8,015,134UniSTSRGSC3.4
CeleraX115,321,361 - 115,322,112UniSTS
Cytogenetic MapXq12UniSTS
px-14c7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X116,106,432 - 116,106,569 (+)MAPPERmRatBN7.2
Rnor_6.0X123,479,092 - 123,479,228NCBIRnor6.0
Rnor_5.0X123,624,033 - 123,624,169UniSTSRnor5.0
RGSC_v3.4X8,000,181 - 8,000,317UniSTSRGSC3.4
CeleraX115,335,842 - 115,335,978UniSTS
Cytogenetic MapXq12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:999
Count of miRNA genes:342
Interacting mature miRNAs:483
Transcripts:ENSRNOT00000016993
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 6 34 18 19 18 2 2 74 30 32 11 2
Low 37 23 23 23 6 9 5 9 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000016993   ⟹   ENSRNOP00000016993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,087,626 - 116,114,159 (-)Ensembl
Rnor_6.0 EnsemblX123,460,280 - 123,486,814 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092415   ⟹   ENSRNOP00000075789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,472,761 - 123,474,154 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092455   ⟹   ENSRNOP00000075907
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,060,929 - 116,101,527 (-)Ensembl
Rnor_6.0 EnsemblX123,462,333 - 123,474,288 (-)Ensembl
RefSeq Acc Id: NM_001107950   ⟹   NP_001101420
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X116,087,626 - 116,114,159 (-)NCBI
Rnor_6.0X123,460,280 - 123,486,814 (-)NCBI
Rnor_5.0X123,605,221 - 123,631,755 (-)NCBI
RGSC_v3.4X7,992,595 - 8,019,120 (+)RGD
CeleraX115,317,375 - 115,344,394 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101420 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10824 (Get FASTA)   NCBI Sequence Viewer  
  EDM10825 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001101420   ⟸   NM_001107950
- UniProtKB: D4A067 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075789   ⟸   ENSRNOT00000092415
RefSeq Acc Id: ENSRNOP00000075907   ⟸   ENSRNOT00000092455
RefSeq Acc Id: ENSRNOP00000016993   ⟸   ENSRNOT00000016993

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A067-F1-model_v2 AlphaFold D4A067 1-222 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701987
Promoter ID:EPDNEW_R12507
Type:multiple initiation site
Name:RGD1564541_1
Description:similar to hypothetical protein FLJ22965
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X123,474,135 - 123,474,195EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564541 AgrOrtholog
BioCyc Gene G2FUF-1304 BioCyc
Ensembl Genes ENSRNOG00000012564 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016993 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075789 UniProtKB/TrEMBL
  ENSRNOP00000075907 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016993 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000092415 UniProtKB/TrEMBL
  ENSRNOT00000092455 UniProtKB/TrEMBL
InterPro UPF0428 UniProtKB/TrEMBL
KEGG Report rno:313433 UniProtKB/TrEMBL
NCBI Gene 313433 ENTREZGENE
PANTHER PTHR46355 UniProtKB/TrEMBL
PhenoGen Steep1 PhenoGen
UniProt A0A0U1RRS1_RAT UniProtKB/TrEMBL
  D4A067 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-10 Steep1  STING1 ER exit protein 1  RGD1564541  similar to hypothetical protein FLJ22965  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564541  similar to hypothetical protein FLJ22965   RGD1564541_predicted  similar to hypothetical protein FLJ22965 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564541_predicted  similar to hypothetical protein FLJ22965 (predicted)  LOC313433  similar to hypothetical protein FLJ22965  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313433  similar to hypothetical protein FLJ22965      Symbol and Name status set to provisional 70820 PROVISIONAL