Tex13c3 (TEX13 family member C3) - Rat Genome Database

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Gene: Tex13c3 (TEX13 family member C3) Rattus norvegicus
Analyze
Symbol: Tex13c3 (Ensembl: LOC100360128)
Name: TEX13 family member C3 (Ensembl:CDNA sequence BC049702-like)
RGD ID: 2322721
Description: ENCODES a protein that exhibits mRNA binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CDNA sequence BC049702-like; LOC100360128; testis-expressed protein 13C-1-like; testis-expressed sequence 13C protein-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X122,017,204 - 122,018,753 (+)NCBIGRCr8
mRatBN7.2X117,151,627 - 117,153,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX117,151,726 - 117,153,147 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X124,692,036 - 124,693,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X124,777,803 - 124,779,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X6,979,147 - 6,980,553 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX116,365,464 - 116,367,271 (+)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function
mRNA binding  (IEA)

References

Genomics

Variants

.
Variants in Tex13c3
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
5685004Bss104Bone structure and strength QTL 1043.9tibia area (VT:1000281)tibia area measurement (CMO:0001382)X113805422126975220Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000109433   ⟹   ENSRNOP00000080667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX117,151,726 - 117,153,147 (+)Ensembl
RefSeq Acc Id: XM_002730175   ⟹   XP_002730221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X122,017,204 - 122,018,753 (+)NCBI
mRatBN7.2X117,151,627 - 117,153,132 (+)NCBI
Rnor_6.0X124,692,036 - 124,693,840 (+)NCBI
Rnor_5.0X124,777,803 - 124,779,391 (+)NCBI
RGSC_v3.4X6,979,147 - 6,980,553 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_002730221 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000080667.1
Reference Protein Sequences
RefSeq Acc Id: XP_002730221   ⟸   XM_002730175
- UniProtKB: A0A8I6G6Y1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000080667   ⟸   ENSRNOT00000109433

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1259 BioCyc
Ensembl Genes ENSRNOG00000068620 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000109433.1 UniProtKB/TrEMBL
InterPro TEX13 UniProtKB/TrEMBL
NCBI Gene 100360128 ENTREZGENE
PANTHER TEX13 FAMILY MEMBER C3 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam TEX13 UniProtKB/TrEMBL
PhenoGen Tex13c3 PhenoGen
RatGTEx ENSRNOG00000068620 RatGTEx
UniProt A0A8I6G6Y1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Tex13c3  TEX13 family member C3  LOC100360128  CDNA sequence BC049702-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100360128  CDNA sequence BC049702-like      Symbol and Name status set to provisional 70820 PROVISIONAL