Chm (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | X | 82,395,463 - 82,554,249 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | X | 82,396,816 - 82,568,642 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | X | 78,203,200 - 78,361,996 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | X | 78,203,204 - 78,361,943 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | X | 79,880,619 - 80,044,252 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | X | 83,285,780 - 83,443,168 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | X | 80,881,046 - 81,038,418 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | X | 84,666,900 - 84,821,775 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | X | 84,666,900 - 84,821,775 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | X | 84,610,339 - 84,767,421 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | X | 101,753,857 - 101,927,941 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | X | 79,495,432 - 79,653,919 (-) | NCBI | | Celera | | | RGSC_v3.1 | X | 101,827,289 - 102,001,374 (-) | NCBI | | | | | Cytogenetic Map | X | q31 | NCBI | | | | |
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CHM (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | X | 85,861,180 - 86,047,558 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 85,861,180 - 86,047,561 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | X | 85,116,185 - 85,302,562 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | X | 85,002,841 - 85,189,222 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | X | 84,925,656 - 85,108,711 | NCBI | | | | | Celera | X | 85,355,767 - 85,542,165 (-) | NCBI | | Celera | | | Cytogenetic Map | X | q21.2 | NCBI | | | | | HuRef | X | 78,692,493 - 78,878,455 (-) | NCBI | | HuRef | | | CHM1_1 | X | 85,009,817 - 85,196,131 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 84,292,297 - 84,478,778 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Chm (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | X | 111,950,289 - 112,095,236 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | X | 111,950,290 - 112,095,214 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | X | 113,040,592 - 113,185,539 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | X | 113,040,593 - 113,185,517 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | X | 110,154,201 - 110,299,124 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | X | 109,158,373 - 109,302,459 (-) | NCBI | | MGSCv36 | mm8 | | Celera | X | 99,640,514 - 99,788,256 (-) | NCBI | | Celera | | | Cytogenetic Map | X | E1 | NCBI | | | | | cM Map | X | 48.94 | NCBI | | | | |
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Chm (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955525 | 360,412 - 563,936 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955525 | 359,393 - 563,930 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CHM (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | X | 85,336,309 - 85,523,721 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | X | 85,339,916 - 85,527,320 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | X | 74,928,576 - 75,115,733 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | X | 85,038,154 - 85,224,741 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | X | 85,038,154 - 85,224,761 (-) | Ensembl | | | panPan2 | panpan1.1 |
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CHM (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | X | 66,636,003 - 66,880,256 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | X | 66,639,095 - 66,880,209 (-) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | X | 57,393,834 - 57,644,452 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | X | 67,968,230 - 68,212,512 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | X | 67,968,255 - 68,212,466 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | X | 65,616,374 - 65,860,581 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | X | 67,253,846 - 67,498,044 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | X | 66,844,991 - 67,089,220 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Chm (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | X | 60,048,529 - 60,212,795 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936547 | 6,368,918 - 6,533,237 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936547 | 6,368,941 - 6,533,199 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
CHM (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | X | 68,873,359 - 69,066,275 (-) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | X | 68,873,882 - 69,066,284 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | X | 78,754,163 - 78,918,794 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
CHM (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | X | 74,626,531 - 74,810,560 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | X | 74,626,028 - 74,810,557 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666067 | 5,989,627 - 6,173,930 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Chm (Heterocephalus glaber - naked mole-rat) |
|